* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘XYomics’ ...
** this is package ‘XYomics’ version ‘0.1.4’
** package ‘XYomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4x6mcy/R.INSTALL2f25c7327b27bf/XYomics/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PCSF.cpp -o PCSF.o
PCSF.cpp: In function ‘std::vector<long unsigned int> constructG(std::vector<int>&, int&)’:
PCSF.cpp:413:10: warning: variable ‘total1’ set but not used [-Wunused-but-set-variable=]
  413 |   double total1=0;
      |          ^~~~~~
PCSF.cpp: In function ‘double cut(int&, std::vector<long unsigned int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<double>&, std::map<std::__cxx11::basic_string<char>, double>&)’:
PCSF.cpp:518:7: warning: variable ‘uncovered_nodes’ set but not used [-Wunused-but-set-variable=]
  518 |   int uncovered_nodes = 0;
      |       ^~~~~~~~~~~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o XYomics.so PCSF.o RcppExports.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4x6mcy/R.INSTALL2f25c7327b27bf/XYomics/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4x6mcy/R.INSTALL2f25c7327b27bf/XYomics/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4x6mcy/R.INSTALL2f25c7327b27bf/XYomics/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-XYomics/00new/XYomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XYomics)