* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘TreeDist’ ... ** this is package ‘TreeDist’ version ‘2.12.0’ ** package ‘TreeDist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-17) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDCgdgn/R.INSTALL28d2562e43e585/TreeDist/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c binary_entropy_counts.cpp -o binary_entropy_counts.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c day_1985.cpp -o day_1985.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hmi.cpp -o hmi.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hpart.cpp -o hpart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hpart_relabel.cpp -o hpart_relabel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lap.cpp -o lap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mast.cpp -o mast.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nni_distance.cpp -o nni_distance.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c path_vector.cpp -o path_vector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c reduce_tree.cpp -o reduce_tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spr.cpp -o spr.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spr_lookup.cpp -o spr_lookup.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_distance_functions.cpp -o tree_distance_functions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeTools/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_distances.cpp -o tree_distances.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o TreeDist.so RcppExports.o binary_entropy_counts.o day_1985.o hmi.o hpart.o hpart_relabel.o lap.o mast.o nni_distance.o path_vector.o reduce_tree.o spr.o spr_lookup.o tree_distance_functions.o tree_distances.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR tree_distance_functions.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()': /usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x104): relocation truncated to fit: R_X86_64_PC32 against `.bss' /usr/include/c++/15/bits/basic_ios.h:476:(.text.startup+0x162): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `std::basic_ostream<char, std::char_traits<char> >::basic_ostream(std::basic_streambuf<char, std::char_traits<char> >*)': /usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x16d): relocation truncated to fit: R_X86_64_PC32 against `.bss' /usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x174): relocation truncated to fit: R_X86_64_PC32 against `.bss' /usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x17b): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()': /usr/include/c++/15/bits/basic_ios.h:476:(.text.startup+0x182): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `std::basic_ostream<char, std::char_traits<char> >::basic_ostream(std::basic_streambuf<char, std::char_traits<char> >*)': /usr/include/c++/15/bits/ostream.h:93:(.text.startup+0x18d): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()': /usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x194): relocation truncated to fit: R_X86_64_PC32 against `.bss' /usr/include/c++/15/bits/basic_ios.h:477:(.text.startup+0x19b): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `std::basic_streambuf<char, std::char_traits<char> >::basic_streambuf()': /usr/include/c++/15/streambuf:475:(.text.startup+0x1b4): relocation truncated to fit: R_X86_64_PC32 against `.bss' tree_distance_functions.o: in function `Rcpp::Rostream<true>::Rostream()': /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/iostream/Rstreambuf.h:48:(.text.startup+0x1bf): additional relocation overflows omitted from the output collect2: error: ld returned 1 exit status make[1]: *** [/home/hornik/tmp/R.check/r-release-gcc/Work/build/share/make/shlib.mk:10: TreeDist.so] Error 1 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDCgdgn/R.INSTALL28d2562e43e585/TreeDist/src' ERROR: compilation failed for package ‘TreeDist’ * removing ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TreeDist’