- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-1) 13.3.0
GNU Fortran (Debian 13.3.0-1) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘TOmicsVis/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘TOmicsVis’ version ‘2.0.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘TOmicsVis’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [16s/22s] OK
- checking whether the package can be loaded with stated dependencies ... [15s/21s] OK
- checking whether the package can be unloaded cleanly ... [15s/19s] OK
- checking whether the namespace can be loaded with stated dependencies ... [14s/16s] OK
- checking whether the namespace can be unloaded cleanly ... [15s/18s] OK
- checking loading without being on the library search path ... [15s/17s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [74s/90s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [143s/176s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
chord_plot 14.786 1.511 19.069
survival_plot 8.764 0.493 12.478
circos_heatmap 8.358 0.758 10.281
heatmap_cluster 6.356 0.690 9.350
go_enrich_stat 5.931 0.798 7.957
box_plot 5.027 0.379 7.229
kegg_enrich_net 5.061 0.255 6.130
umap_plot 4.972 0.321 5.390
violin_plot 4.964 0.328 6.398
tsne_plot 4.381 0.301 5.105
go_enrich_dot 3.396 0.146 5.005
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [133s/180s] OK
- checking PDF version of manual ... [8s/10s] OK
- checking HTML version of manual ... [3s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK