* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘RcppTskit’ ...
** this is package ‘RcppTskit’ version ‘0.2.0’
** package ‘RcppTskit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-12) 14.3.0’
using C++20
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprEoJMR/R.INSTALL295da62c9b392d/RcppTskit/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/convert.c -o tskit/convert.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/core.c -o tskit/core.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/genotypes.c -o tskit/genotypes.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/haplotype_matching.c -o tskit/haplotype_matching.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/kastore.c -o tskit/kastore.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/stats.c -o tskit/stats.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/tables.c -o tskit/tables.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -fpic -c tskit/trees.c -o tskit/trees.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tests_c.c -o tests_c.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppTskit.cpp -o RcppTskit.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tests.cpp -o tests.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/include -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DNDEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o RcppTskit.so tskit/convert.o tskit/core.o tskit/genotypes.o tskit/haplotype_matching.o tskit/kastore.o tskit/stats.o tskit/tables.o tskit/trees.o tests_c.o RcppTskit.o tests.o RcppExports.o -Wl,-soname,RcppTskit.so -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprEoJMR/R.INSTALL295da62c9b392d/RcppTskit/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprEoJMR/R.INSTALL295da62c9b392d/RcppTskit/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprEoJMR/R.INSTALL295da62c9b392d/RcppTskit/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-RcppTskit/00new/RcppTskit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppTskit)