* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘RTMB’ ...
** this is package ‘RTMB’ version ‘1.9’
** package ‘RTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmFqCl3/R.INSTALL19699033b4d12f/RTMB/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RTMB.cpp -o RTMB.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RTMB_tape.cpp -o RTMB_tape.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c TMB.cpp -o TMB.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bessel.cpp -o bessel.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c branching.cpp -o branching.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distributions.cpp -o distributions.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c expAv.cpp -o expAv.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c integrate.cpp -o integrate.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c interpol.cpp -o interpol.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lapack.cpp -o lapack.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math.cpp -o math.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/SparseLU:35,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/Sparse:29,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/TMB.hpp:96,
                 from TMB.h:38,
                 from RTMB.h:6,
                 from math.cpp:4:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: In instantiation of ‘void Eigen::internal::SparseLUImpl<Scalar, StorageIndex>::heap_relax_snode(Eigen::Index, IndexVector&, Eigen::Index, IndexVector&, IndexVector&) [with Scalar = TMBad::global::ad_aug; StorageIndex = int; Eigen::Index = long int; IndexVector = Eigen::Matrix<int, -1, 1>]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:669:27:   required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::factorize(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<TMBad::global::ad_aug>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<TMBad::global::ad_aug>]’
  669 |     Base::heap_relax_snode(n, m_etree, m_perfv.relax, marker, relax_end);
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:187:7:   required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::compute(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<TMBad::global::ad_aug>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<TMBad::global::ad_aug>]’
  187 |       factorize(matrix);
      |       ^~~~~~~~~
math.cpp:415:22:   required from here
  415 |     (*solver).compute(S);
      |     ~~~~~~~~~~~~~~~~~^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable ‘nsuper_et_post’ set but not used [-Wunused-but-set-variable=]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
      |         ^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable ‘nsuper_et’ set but not used [-Wunused-but-set-variable=]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree
      |         ^~~~~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math_complex.cpp -o math_complex.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c misc.cpp -o misc.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pnorm.cpp -o pnorm.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c poshess.cpp -o poshess.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c subset.cpp -o subset.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c uniroot.cpp -o uniroot.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o RTMB.so RTMB.o RTMB_tape.o RcppExports.o TMB.o bessel.o branching.o distributions.o expAv.o integrate.o interpol.o lapack.o math.o math_complex.o misc.o pnorm.o poshess.o subset.o uniroot.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmFqCl3/R.INSTALL19699033b4d12f/RTMB/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmFqCl3/R.INSTALL19699033b4d12f/RTMB/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmFqCl3/R.INSTALL19699033b4d12f/RTMB/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-RTMB/00new/RTMB/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘lbeta’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘eigen’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘svd’ from ‘base’ in package ‘RTMB’
    (from the saved implicit definition)
Creating a generic function for ‘svd’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘integrate’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘Vectorize’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dcauchy’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pnbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dchisq’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pchisq’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qchisq’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘order’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘findInterval’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘uniroot’ from package ‘stats’ in package ‘RTMB’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RTMB)