* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘RMVL’ ...
** package ‘RMVL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpSAUa0I/R.INSTALL140c84469b8651/RMVL/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RlibMVL.c -o RlibMVL.o
RlibMVL.c: In function ‘write_vector’:
RlibMVL.c:1693:18: warning: unused variable ‘strvec’ [-Wunused-variable]
1693 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c: In function ‘start_write_vector’:
RlibMVL.c:1934:18: warning: unused variable ‘strvec’ [-Wunused-variable]
1934 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c:1933:19: warning: unused variable ‘strvec2’ [-Wunused-variable]
1933 | const char *ch, **strvec2;
| ^~~~~~~
RlibMVL.c: In function ‘rewrite_vector’:
RlibMVL.c:2183:18: warning: unused variable ‘strvec’ [-Wunused-variable]
2183 | LIBMVL_OFFSET64 *strvec;
| ^~~~~~
RlibMVL.c:2182:19: warning: unused variable ‘strvec2’ [-Wunused-variable]
2182 | const char *ch, **strvec2;
| ^~~~~~~
RlibMVL.c: In function ‘write_spatial_groups1’:
RlibMVL.c:3419:6: warning: unused variable ‘data’ [-Wunused-variable]
3419 | SEXP data;
| ^~~~
RlibMVL.c: In function ‘get_neighbors’:
RlibMVL.c:4220:6: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
4220 | ball=calloc(ball_size*Nbits, sizeof(*ball));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/R.h:43,
from RlibMVL.c:19:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
RlibMVL.c: In function ‘neighbors_lapply’:
RlibMVL.c:4449:6: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
4449 | ball=calloc(ball_size*Nbits, sizeof(*ball));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libMVL.c -o libMVL.o
libMVL.c: In function ‘mvl_write_directory’:
libMVL.c:862:7: warning: unused variable ‘cur’ [-Wunused-variable]
862 | off_t cur;
| ^~~
libMVL.c:860:18: warning: unused variable ‘p’ [-Wunused-variable]
860 | LIBMVL_OFFSET64 *p;
| ^
libMVL.c: In function ‘mvl_indexed_copy_vector’:
libMVL.c:458:25: warning: ‘char_offset’ may be used uninitialized [-Wmaybe-uninitialized]
458 | LIBMVL_OFFSET64 offset, char_offset;
| ^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRMVL_PACKAGE -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libMVL_sort.cc -o libMVL_sort.o
In file included from libMVL_sort.cc:8:
libMVL.h: In function ‘double mvl_as_double(const LIBMVL_VECTOR*, long int)’:
libMVL.h:505:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
505 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(NAN);
| ^
libMVL.h: In function ‘double mvl_as_double_default(const LIBMVL_VECTOR*, long int, double)’:
libMVL.h:532:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
532 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(def);
| ^
libMVL.h: In function ‘LIBMVL_OFFSET64 mvl_as_offset(const LIBMVL_VECTOR*, long int)’:
libMVL.h:559:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘LIBMVL_OFFSET64’ {aka ‘long long unsigned int’} [-Wsign-compare]
559 | if((idx<0) || (idx>=mvl_vector_length(vec)))return(0);
| ^
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o RMVL.so RlibMVL.o libMVL.o libMVL_sort.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpSAUa0I/R.INSTALL140c84469b8651/RMVL/src'
make[1]: Entering directory '/tmp/RtmpSAUa0I/R.INSTALL140c84469b8651/RMVL/src'
make[1]: Leaving directory '/tmp/RtmpSAUa0I/R.INSTALL140c84469b8651/RMVL/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-RMVL/00new/RMVL/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RMVL)