• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-12) 14.3.0     GNU Fortran (Debian 14.3.0-12) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘REndo/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘REndo’ version ‘2.4.10’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘REndo’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.3.0-12) 14.3.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/26s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [147s/191s] ERROR   Running ‘testthat.R’ [147s/191s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(REndo)   > library(Formula)   >   > test_check("REndo")   Saving _problems/test-correctness_multilevel-253.R   Saving _problems/test-inputchecks_multilevel-112.R   Saving _problems/test-inputchecks_multilevel-113.R        |     | | 0%     |     |=================================== | 50%     |     |======================================================================| 100%        |     | | 0%     |     |=================================== | 50%     |     |======================================================================| 100%        |     | | 0%     |     |=================================== | 50%     |     |======================================================================| 100%        |     | | 0%     |     |=================================== | 50%     |     |======================================================================| 100%   [ FAIL 3 | WARN 0 | SKIP 30 | PASS 2152 ]      ══ Skipped tests (30) ══════════════════════════════════════════════════════════   • On CRAN (30): 'test-correctness_copulacorrections.R:14:3',     'test-correctness_copulacorrections.R:90:3',     'test-correctness_copulacorrections.R:204:3',     'test-correctness_latentIV.R:10:3', 'test-correctness_multilevel.R:12:3',     'test-correctness_multilevel.R:62:3', 'test-correctness_multilevel.R:120:3',     'test-correctness_multilevel.R:151:3', 'test-correctness_multilevel.R:185:3',     'test-correctness_multilevel.R:213:3', 'test-correctness_multilevel.R:228:3',     'test-correctness_multilevel.R:293:3',     'test-runability_copulacorrection.R:12:3',     'test-runability_copulacorrection.R:30:3',     'test-runability_copulacorrection.R:90:3',     'test-runability_copulacorrection.R:184:3',     'test-runability_copulacorrection.R:204:3',     'test-runability_copulacorrection.R:219:3',     'test-runability_copulacorrection.R:303:3',     'test-runability_copulacorrection.R:316:3',     'test-runability_multilevel.R:22:3', 'test-runability_multilevel.R:61:3',     'test-runability_multilevel.R:75:3', 'test-runability_multilevel.R:93:3',     'test-runability_multilevel.R:103:3', 'test-runability_multilevel.R:112:3',     'test-runability_multilevel.R:124:3', 'test-runability_multilevel.R:136:3',     'test-runability_multilevel.R:157:3',     'test-s3methods_copualcorrection.R:46:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-correctness_multilevel.R:251:1'): (code run outside of `test_that()`) ──   Expected `... <- NULL` to run silently.   Actual noise: warnings.   ── Failure ('test-inputchecks_multilevel.R:112:3'): Fail if no slope provided ──   `multilevelIV(...)` threw an error with unexpected message.   Expected match: "The above errors were encountered!"   Actual message: "error in evaluating the argument 'x' in selecting a method for function 'forceSymmetric': non-conformable matrix dimensions in .Arith.Csparse(e1, e2, .Generic, class. = \"dgCMatrix\")"   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-inputchecks_multilevel.R:112:3     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. ├─REndo::multilevelIV(...)     7. │ └─REndo:::multilevel_3levels(...)     8. │ ├─... + Matrix::bdiag(l.L2.V.part)     9. │ └─... + Matrix::bdiag(l.L2.V.part)    10. │ ├─Matrix::forceSymmetric(callGeneric(.M2gen(e1), .M2gen(e2)))    11. │ ├─methods::callGeneric(.M2gen(e1), .M2gen(e2))    12. │ │ └─base::eval(call, parent.frame())    13. │ │ └─base::eval(call, parent.frame())    14. │ ├─.M2gen(e1) + .M2gen(e2)    15. │ └─.M2gen(e1) + .M2gen(e2)    16. │ └─Matrix:::.Arith.Csparse(e1, e2, .Generic, class. = "dgCMatrix")    17. │ └─Matrix:::.Ops.checkDim(dim(e1), dim(e2))    18. │ └─base::stop(...)    19. └─base::.handleSimpleError(...)    20. └─base (local) h(simpleError(msg, call))   ── Failure ('test-inputchecks_multilevel.R:113:3'): Fail if no slope provided ──   `multilevelIV(...)` threw an error with unexpected message.   Expected match: "The above errors were encountered!"   Actual message: "non-conformable matrix dimensions in .diag2T.smart(e1, e2, kind = \"d\") + e2"   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-inputchecks_multilevel.R:113:3     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. └─REndo::multilevelIV(...)     7. └─REndo:::multilevel_3levels(...)     8. ├─Matrix::Diagonal(sigma.sq, n = nrow(X)) + ...     9. └─Matrix::Diagonal(sigma.sq, n = nrow(X)) + ...    10. ├─methods::callGeneric(.diag2T.smart(e1, e2, kind = "d"), e2)    11. │ └─base::eval(call, parent.frame())    12. │ └─base::eval(call, parent.frame())    13. ├─.diag2T.smart(e1, e2, kind = "d") + e2    14. └─.diag2T.smart(e1, e2, kind = "d") + e2    15. └─Matrix:::.Ops.checkDim(dim(e1), dim(e2))      [ FAIL 3 | WARN 0 | SKIP 30 | PASS 2152 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/1s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR