* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘PeakSegJoint’ ...
** package ‘PeakSegJoint’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp9Ad61y/R.INSTALL324b873efaa500/PeakSegJoint/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c OptimalPoissonLoss.c -o OptimalPoissonLoss.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJoint.c -o PeakSegJoint.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJointFaster.c -o PeakSegJointFaster.o
PeakSegJointFaster.c: In function ‘PeakSegJointFaster’:
PeakSegJointFaster.c:381:9: warning: ‘best_seg2’ may be used uninitialized [-Wmaybe-uninitialized]
  381 |       if(best_seg2 != 0){
      |         ^
PeakSegJointFaster.c:102:18: note: ‘best_seg2’ was declared here
  102 |   int best_seg1, best_seg2;
      |                  ^~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PeakSegJoint_interface.c -o PeakSegJoint_interface.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c binSum.c -o binSum.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c clusterPeaks.c -o clusterPeaks.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c multiClusterPeaks.c -o multiClusterPeaks.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c profile.c -o profile.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o PeakSegJoint.so OptimalPoissonLoss.o PeakSegJoint.o PeakSegJointFaster.o PeakSegJoint_interface.o binSum.o clusterPeaks.o multiClusterPeaks.o profile.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp9Ad61y/R.INSTALL324b873efaa500/PeakSegJoint/src'
make[1]: Entering directory '/tmp/Rtmp9Ad61y/R.INSTALL324b873efaa500/PeakSegJoint/src'
make[1]: Leaving directory '/tmp/Rtmp9Ad61y/R.INSTALL324b873efaa500/PeakSegJoint/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-PeakSegJoint/00new/PeakSegJoint/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘PeakSegJoint’ as ‘PeakSegJoint_2024.1.24_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (PeakSegJoint)