- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘MXM/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘MXM’ version ‘1.5.5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘MXM’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [5s/5s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the package can be unloaded cleanly ... [4s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [5s/6s] OK
- checking loading without being on the library search path ... [5s/6s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [215s/268s] OK
- checking Rd files ... [2s/2s] NOTE
checkRd: (-1) bbc.Rd:39: Lost braces
39 | The "nbdev.mxm" (negative binomial deviance) is missing. For more information on these see \code{\link{cv.ses}}. bold{Note} that they come with "".
| ^
checkRd: (-1) cv.fbed.lmm.reg.Rd:32: Lost braces; missing escapes or markup?
32 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.
| ^
checkRd: (-1) cv.gomp.Rd:29: Lost braces; missing escapes or markup?
29 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.
| ^
checkRd: (-1) cv.ses.Rd:94: Lost braces; missing escapes or markup?
94 | The folds of the data to use (a list generated by the function generateCVRuns {TunePareto}). If NULL the folds are created internally with the same function.
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [30s/40s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [29s/46s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘MMPC_tutorial.Rmd’ using knitr
Warning in xfun::prose_index(text) : Code fences are not balanced
Warning in prose_index(x) : Code fences are not balanced
Warning in xfun::prose_index(text) : Code fences are not balanced
--- finished re-building ‘MMPC_tutorial.Rmd’
--- re-building ‘SES_KMVerrou_11_12.Rmd’ using knitr
Quitting from lines 54-67 [unnamed-chunk-2] (SES_KMVerrou_11_12.Rmd)
Error: processing vignette 'SES_KMVerrou_11_12.Rmd' failed with diagnostics:
cannot open the connection to 'https://archive.ics.uci.edu/ml/machine-learning-databases/wine/wine.data'
--- failed re-building ‘SES_KMVerrou_11_12.Rmd’
--- re-building ‘FS_guide.ltx’ using tex
--- finished re-building ‘FS_guide.ltx’
--- re-building ‘article.ltx’ using tex
--- finished re-building ‘article.ltx’
--- re-building ‘guide.ltx’ using tex
--- finished re-building ‘guide.ltx’
SUMMARY: processing the following file failed:
‘SES_KMVerrou_11_12.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [14s/18s] OK
- checking HTML version of manual ... [7s/12s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE