• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
• checking C++ specification ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/23s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [86s/160s] ERROR   Running ‘testthat.R’ [86s/160s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2026-01-03 05:44:29.082076 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2026-01-03 05:44:34.806196 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2026-01-03 05:44:39.875712 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2026-01-03 05:44:49.355435 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:44:54.18401 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:44:59.041965 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3976251 on localhost:11408 at 05:44:59.513   2026-01-03 05:45:03.667814 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.626 s.   2026-01-03 05:45:03.762693 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:08.497214 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:14.152887 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2026-01-03 05:45:20.237874 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:25.662703 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:29.65236 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:33.023897 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:33.060222 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:38.085997 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.105462 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.138207 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.173842 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.21122 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.246883 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.276348 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:38.300142 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:43.258345 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   starting worker pid=3987415 on localhost:11408 at 05:45:43.802   starting worker pid=3987414 on localhost:11408 at 05:45:43.816   2026-01-03 05:45:52.363297 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:45:57.541566 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:45:57.555188 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:45:57.559301 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=3990961 on localhost:11408 at 05:45:57.976   2026-01-03 05:46:02.385395 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.81999999999999 s.} ...   2026-01-03 05:46:02.387968 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3992179 on localhost:11408 at 05:46:02.793   2026-01-03 05:46:07.312619 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.925 s.   2026-01-03 05:46:07.315118 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=3993786 on localhost:11408 at 05:46:07.697   2026-01-03 05:46:12.376384 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.06099999999999 s.   2026-01-03 05:46:12.378369 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.823 s.   2026-01-03 05:46:12.38217 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:46:12.394746 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:46:12.416452 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:46:12.430821 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:46:12.501802 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:46:12.51537 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:46:12.546135 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:46:16.437677 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:46:16.448217 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:46:16.478409 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32   2026-01-03 05:46:16.491296 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2026-01-03 05:46:16.520907 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2026-01-03 05:46:22.84798 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:46:28.499179 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=3999710 on localhost:11408 at 05:46:28.961   2026-01-03 05:46:34.219338 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.72 s.   2026-01-03 05:46:34.229123 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=4000963 on localhost:11408 at 05:46:34.610   2026-01-03 05:46:39.4661 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.245 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2026-01-03 05:46:39.53447 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:46:43.184434 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:46:48.122644 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=4003547 on localhost:11408 at 05:46:48.533   2026-01-03 05:46:52.617395 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.495 s.   2026-01-03 05:46:52.67356 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...   2026-01-03 05:46:57.375579 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=4007188 on localhost:11408 at 05:46:57.864   2026-01-03 05:47:03.341136 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.96000000000001 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [77s/156s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR