• using R version 4.6.0 (2026-04-24)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-1) 16.1.0     GNU Fortran (Debian 16.1.0-1) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-06-13 04:05:06 UTC
• checking for file ‘FME/DESCRIPTION’ ... OK
• this is package ‘FME’ version ‘1.3.6.4’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘FME’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
• used Fortran compiler: ‘GNU Fortran (Debian 16.1.0-1) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/18s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/15s] OK Examples with CPU (user + system) or elapsed time > 5s          user system elapsed modMCMC 3.907 0.012 5.078
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [131s/172s] WARNING Error(s) in re-building vignettes:   ... --- re-building ‘FME.Rnw’ using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Error: processing vignette 'FME.Rnw' failed with diagnostics: Running 'texi2dvi' on 'FME.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.84 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.84 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘FME.Rnw’ --- re-building ‘FMEdyna.Rnw’ using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Error: processing vignette 'FMEdyna.Rnw' failed with diagnostics: Running 'texi2dvi' on 'FMEdyna.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.79 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.79 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘FMEdyna.Rnw’ --- re-building ‘FMEmcmc.Rnw’ using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Error: processing vignette 'FMEmcmc.Rnw' failed with diagnostics: Running 'texi2dvi' on 'FMEmcmc.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.72 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.72 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘FMEmcmc.Rnw’ --- re-building ‘FMEother.Rnw’ using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Error: processing vignette 'FMEother.Rnw' failed with diagnostics: Running 'texi2dvi' on 'FMEother.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.81 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.81 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘FMEother.Rnw’ --- re-building ‘FMEsteady.Rnw’ using Sweave Loading required package: deSolve Loading required package: rootSolve Loading required package: coda Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Warning in par(usr) : argument 1 does not name a graphical parameter Error: processing vignette 'FMEsteady.Rnw' failed with diagnostics: Running 'texi2dvi' on 'FMEsteady.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.82 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.82 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘FMEsteady.Rnw’ SUMMARY: processing the following files failed:   ‘FME.Rnw’ ‘FMEdyna.Rnw’ ‘FMEmcmc.Rnw’ ‘FMEother.Rnw’ ‘FMEsteady.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [6s/8s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING