• using R version 4.3.3 (2024-02-29)
• using platform: x86_64-pc-linux-gnu (64-bit)
• R was compiled by     gcc-13 (Debian 13.2.0-13) 13.2.0     GNU Fortran (Debian 13.2.0-13) 13.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘DoseFinding/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DoseFinding’ version ‘1.1-1’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘RBesT’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘DoseFinding’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [35s/44s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/11s] ERROR Running examples in ‘DoseFinding-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bMCTtest > ### Title: Performs Bayesian multiple contrast test > ### Aliases: bMCTtest > > ### ** Examples > > > require(RBesT) Loading required package: RBesT Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :   there is no package called ‘RBesT’ > > ############################### > ## Normal outcome > ############################### > > data(biom) > ## define shapes for which to calculate optimal contrasts > doses <- c(0, 0.05, 0.2, 0.6, 1) > modlist <- Mods(emax = 0.05, linear = NULL, logistic = c(0.5, 0.1), + linInt = c(0, 1, 1, 1), doses = doses) > ## specify an informative prior for placebo, weakly informative for other arms > plc_prior <- mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) Error in mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10)) :   could not find function "mixnorm" Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [47s/57s] ERROR   Running ‘testgFit.R’ [2s/3s]   Running ‘testplanMod.R’ [0s/1s]   Running ‘testsDesign.R’ [4s/5s]   Running ‘testsFitting.R’ [2s/3s]   Running ‘testsMCPMod.R’ [4s/5s]   Running ‘testsMCT.R’ [5s/7s]   Running ‘testsoptContr.R’ [2s/2s]   Running ‘testsplotDRMod.R’ [0s/0s]   Running ‘testssampSize.R’ [0s/0s]   Running ‘testssamplMod.R’ [4s/4s]   Running ‘testthat.R’ [22s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > ## Note: Files in this directory are old test cases that accumulated   > ## historically over time, many of them commented out for time reasons   > ## (and unorganized due to lack of anything close to testthat at the   > ## time of creation). The testthat sub-directory now contains a   > ## selected subset of these tests (with some additions) that have been   > ## brought in the testthat format.   > library(testthat)   > library(DoseFinding)   Loading required package: ggplot2   Loading required package: lattice   Loading required package: mvtnorm   > options(testthat.progress.max_fails = 100)   >   > Sys.unsetenv("R_TESTS")   > test_check("DoseFinding")   Running simulations   Scenario 1/5        |     | | 0%     |     |* | 1%     |     |* | 2%     |     |** | 3%     |     |*** | 4%     |     |**** | 5%     |     |**** | 6%     |     |***** | 7%     |     |****** | 8%     |     |****** | 9%     |     |******* | 10%     |     |******** | 11%     |     |******** | 12%     |     |********* | 13%     |     |********** | 14%     |     |********** | 15%     |     |*********** | 16%     |     |************ | 17%     |     |************* | 18%     |     |************* | 19%     |     |************** | 20%     | 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    |******************************************************* | 78%     |     |******************************************************* | 79%     |     |******************************************************** | 80%     |     |********************************************************* | 81%     |     |********************************************************* | 82%     |     |********************************************************** | 83%     |     |*********************************************************** | 84%     |     |************************************************************ | 85%     |     |************************************************************ | 86%     |     |************************************************************* | 87%     |     |************************************************************** | 88%     |     |************************************************************** | 89%     |     |*************************************************************** | 90%     |     |**************************************************************** | 91%     |     |**************************************************************** | 92%     |     |***************************************************************** | 93%     |     |****************************************************************** | 94%     |     |****************************************************************** | 95%     |     |******************************************************************* | 96%     |     |******************************************************************** | 97%     |     |********************************************************************* | 98%     |     |********************************************************************* | 99%     |     |**********************************************************************| 100%   [ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (2): 'test-optContr.R:81:3', 'test-planMod.R:27:3'   • RBesT package not available (10): 'test-bMCTtest.R:57:3',     'test-bMCTtest.R:81:3', 'test-bMCTtest.R:103:3', 'test-bMCTtest.R:125:3',     'test-bMCTtest.R:147:3', 'test-bMCTtest.R:169:3', 'test-bMCTtest.R:189:3',     'test-bMCTtest.R:213:3', 'test-bMCTtest.R:228:3', 'test-bMCTtest.R:244:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-bMCTtest.R:266:3'): Error message for incorrect prior arguments ──   Error in `mixnorm(inf = c(0.8, 0.4, 0.1), rob = c(0.2, 0.4, 10))`: could not find function "mixnorm"      [ FAIL 1 | WARN 10 | SKIP 12 | PASS 171 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [368s/456s] OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [4s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE