* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/CACIMAR.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-25) 13.2.0
    GNU Fortran (Debian 13.2.0-25) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘CACIMAR/DESCRIPTION’ ... OK
* this is package ‘CACIMAR’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CACIMAR’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/CACIMAR-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [10s/13s] OK
* checking whether the package can be loaded with stated dependencies ... [10s/13s] OK
* checking whether the package can be unloaded cleanly ... [9s/13s] OK
* checking whether the namespace can be loaded with stated dependencies ... [8s/11s] OK
* checking whether the namespace can be unloaded cleanly ... [10s/12s] OK
* checking loading without being on the library search path ... [10s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [48s/59s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [3s/3s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [48s/65s] OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
Identify_ConservedMarkers   7.798  0.012   9.558
Identify_ConservedNetworks  6.263  0.000   9.062
Identify_ConservedCellTypes 5.210  0.060   6.807
Heatmap_Cor                 5.172  0.069   6.977
Plot_MarkersHeatmap         4.483  0.003   6.436
Identify_Markers            4.450  0.004   6.937
Format_Markers_Frac         4.438  0.004   5.667
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [41s/52s] OK
  Running ‘testthat.R’ [41s/52s]
* checking PDF version of manual ... [5s/8s] OK
* checking HTML version of manual ... [0s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK