- using R version 4.0.4 RC (2021-02-08 r79977)
- using platform: i386-pc-solaris2.10 (32-bit)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘mi/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘mi’ version ‘1.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mi’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [59s/89s] NOTE
.MAR_opt: no visible global function definition for ‘tail’
.MAR_opt: no visible global function definition for ‘optim’
.MPinverse: no visible global function definition for ‘cov’
.binnedplot: no visible global function definition for ‘abline’
.binnedplot: no visible global function definition for ‘lines’
.binnedplot: no visible global function definition for ‘points’
.binnedpoints: no visible global function definition for ‘points’
.draw_parameters: no visible global function definition for ‘rnorm’
.guess_type: no visible global function definition for ‘is.ts’
.mi: no visible global function definition for ‘write.table’
.mi_continuous: no visible global function definition for ‘rnorm’
.mi_continuous: no visible global function definition for ‘predict’
.mi_continuous: no visible global function definition for ‘median’
.mi_proportion: no visible global function definition for ‘rbeta’
.mi_proportion: no visible global function definition for ‘predict’
.mi_proportion: no visible global function definition for ‘median’
.parse_trans: no visible binding for global variable ‘qnorm’
.pmm: no visible global function definition for ‘mahalanobis’
.rdirichlet: no visible global function definition for ‘rgamma’
.rgbeta: no visible global function definition for ‘rbeta’
.rgbeta: no visible global function definition for ‘rbinom’
.rpois.od: no visible global function definition for ‘rpois’
.rpois.od: no visible global function definition for ‘rnbinom’
.set_priors : foo: no visible global function definition for ‘dnorm’
.set_priors : foo: no visible global function definition for ‘dlogis’
Rhats : make_Rhat: no visible binding for global variable ‘sd’
Rhats : make_Rhat: no visible binding for global variable ‘var’
find_Omega: no visible global function definition for ‘optim’
make_start: no visible global function definition for ‘cov2cor’
mi2BUGS : <anonymous> : <anonymous>: no visible binding for global
variable ‘sd’
mi2stata: no visible global function definition for ‘write.table’
multinomial: no visible global function definition for ‘make.link’
multinomial: no visible global function definition for ‘binomial’
multinomial : aic: no visible global function definition for ‘dbinom’
multinomial : simfun: no visible global function definition for
‘model.response’
multinomial : simfun: no visible global function definition for
‘rbinom’
pool: no visible binding for global variable ‘var’
pool: no visible global function definition for ‘pt’
pool: no visible global function definition for ‘pnorm’
rdata.frame: no visible global function definition for ‘rnorm’
rdata.frame: no visible global function definition for ‘rt’
rdata.frame: no visible global function definition for ‘rchisq’
rdata.frame: no visible global function definition for ‘quantile’
rdata.frame: no visible global function definition for ‘as.formula’
rdata.frame: no visible global function definition for ‘lm’
rdata.frame: no visible global function definition for ‘cor’
rdata.frame: no visible global function definition for ‘qpois’
rdata.frame: no visible global function definition for ‘pt’
tobin5: no visible global function definition for ‘as.formula’
tobin5: no visible global function definition for ‘binomial’
tobin5 : <anonymous>: no visible global function definition for ‘dnorm’
tobin5 : <anonymous>: no visible global function definition for ‘pnorm’
tobin5: no visible binding for global variable ‘gaussian’
change_family,missing-proportion-family: no visible binding for global
variable ‘qnorm’
change_family,missing-proportion-family: no visible binding for global
variable ‘pnorm’
change_family,missing-proportion-family: no visible binding for global
variable ‘.identity_transformation’
change_model,missing-missing_variable-character: no visible global
function definition for ‘binomial’
change_model,missing-missing_variable-character: no visible global
function definition for ‘quasibinomial’
change_model,missing-missing_variable-character: no visible global
function definition for ‘quasipoisson’
change_model,missing-missing_variable-character: no visible global
function definition for ‘poisson’
change_model,missing-missing_variable-character: no visible global
function definition for ‘gaussian’
change_transformation,missing-missing_variable-function: no visible
global function definition for ‘sd’
fit_model,missing-allcategorical_missing_data.frame: no visible global
function definition for ‘runif’
fit_model,missing-allcategorical_missing_data.frame : <anonymous>: no
visible global function definition for ‘rmultinom’
fit_model,missing-allcategorical_missing_data.frame : <anonymous>: no
visible global function definition for ‘rbeta’
fit_model,missing-allcategorical_missing_data.frame: no visible global
function definition for ‘rgamma’
fit_model,missing-multilevel_missing_data.frame: no visible global
function definition for ‘rnorm’
fit_model,missing-multilevel_missing_data.frame: no visible binding for
global variable ‘X’
fit_model,ordered-categorical-missing_data.frame: no visible global
function definition for ‘qlogis’
fitted,clogit : foo: no visible global function definition for ‘qlogis’
fitted,clogit : foo: no visible global function definition for ‘plogis’
fitted,clogit: no visible global function definition for ‘uniroot’
fitted,clogit: no visible global function definition for ‘plogis’
fitted,clogit: no visible global function definition for ‘qlogis’
hist,binary: no visible global function definition for ‘axis’
hist,binary: no visible global function definition for ‘segments’
hist,categorical: no visible global function definition for ‘axis’
hist,categorical: no visible global function definition for ‘segments’
hist,missing_data.frame: no visible global function definition for
‘par’
hist,missing_data.frame: no visible global function definition for
‘n2mfrow’
hist,missing_data.frame: no visible global function definition for
‘title’
hist,missing_variable: no visible global function definition for ‘axis’
hist,missing_variable: no visible global function definition for
‘segments’
hist,semi-continuous: no visible global function definition for ‘axis’
hist,semi-continuous: no visible global function definition for
‘segments’
image,dgTMatrix: no visible global function definition for ‘grey’
image,dgTMatrix: no visible global function definition for
‘colorRampPalette’
image,dgTMatrix : <anonymous>: no visible global function definition
for ‘par’
image,mi: no visible global function definition for ‘order.dendrogram’
image,mi: no visible global function definition for ‘as.dendrogram’
image,mi: no visible global function definition for ‘hclust’
image,mi: no visible global function definition for ‘dist’
image,mi : foo: no visible global function definition for ‘sd’
image,mi : foo: no visible global function definition for ‘na.omit’
image,mi: no visible global function definition for ‘Matrix’
image,mi: no visible global function definition for ‘heat.colors’
image,missing_data.frame: no visible global function definition for
‘order.dendrogram’
image,missing_data.frame: no visible global function definition for
‘as.dendrogram’
image,missing_data.frame: no visible global function definition for
‘hclust’
image,missing_data.frame: no visible global function definition for
‘dist’
image,missing_data.frame : <anonymous>: no visible global function
definition for ‘sd’
image,missing_data.frame : <anonymous>: no visible global function
definition for ‘na.omit’
image,missing_data.frame: no visible global function definition for
‘Matrix’
image,missing_data.frame: no visible global function definition for
‘heat.colors’
initialize,missing_data.frame: no visible global function definition
for ‘cor’
mi,binary-glm: no visible global function definition for ‘rbinom’
mi,binary-glm: no visible global function definition for ‘predict’
mi,binary-glm: no visible global function definition for ‘median’
mi,bounded-continuous-missing: no visible global function definition
for ‘runif’
mi,categorical-matrix : <anonymous>: no visible global function
definition for ‘rmultinom’
mi,count-glm: no visible global function definition for ‘predict’
mi,count-glm: no visible global function definition for ‘median’
mi,grouped-binary-clogit: no visible global function definition for
‘untangle.specials’
mi,grouped-binary-clogit: no visible global function definition for
‘model.frame’
mi,ordered-categorical-polr: no visible global function definition for
‘head’
mi,ordered-categorical-polr: no visible binding for global variable
‘plogis’
mi,ordered-categorical-polr: no visible binding for global variable
‘pnorm’
mi,ordered-categorical-polr: no visible binding for global variable
‘pcauchy’
mi,ordered-categorical-polr : <anonymous>: no visible global function
definition for ‘rmultinom’
mi,ordered-categorical-polr: no visible global function definition for
‘predict’
mi,ordered-categorical-polr: no visible global function definition for
‘median’
mi,unordered-categorical-RNL : <anonymous>: no visible global function
definition for ‘rmultinom’
mi,unordered-categorical-multinom: no visible global function
definition for ‘model.matrix’
mi,unordered-categorical-multinom : <anonymous>: no visible global
function definition for ‘rmultinom’
mi,unordered-categorical-multinom: no visible global function
definition for ‘predict’
plot,allcategorical_missing_data.frame-binary : <anonymous>: no visible
global function definition for ‘rmultinom’
plot,allcategorical_missing_data.frame-binary: no visible global
function definition for ‘barplot’
plot,allcategorical_missing_data.frame-categorical : <anonymous>: no
visible global function definition for ‘rmultinom’
plot,allcategorical_missing_data.frame-categorical: no visible global
function definition for ‘barplot’
plot,mi-ANY: no visible global function definition for ‘par’
plot,mi-ANY: no visible global function definition for ‘title’
plot,missing_data.frame-binary: no visible global function definition
for ‘abline’
plot,missing_data.frame-binary: no visible global function definition
for ‘points’
plot,missing_data.frame-categorical: no visible global function
definition for ‘abline’
plot,missing_data.frame-categorical: no visible global function
definition for ‘points’
plot,missing_data.frame-missing_variable: no visible global function
definition for ‘abline’
plot,missing_data.frame-missing_variable: no visible global function
definition for ‘points’
plot,missing_data.frame-missing_variable: no visible global function
definition for ‘lines’
plot,missing_data.frame-missing_variable: no visible global function
definition for ‘lowess’
plot,missing_data.frame-semi-continuous: no visible global function
definition for ‘abline’
plot,missing_data.frame-semi-continuous: no visible global function
definition for ‘points’
plot,missing_data.frame-semi-continuous: no visible global function
definition for ‘lines’
plot,missing_data.frame-semi-continuous: no visible global function
definition for ‘lowess’
Undefined global functions or variables:
.identity_transformation Matrix X abline as.dendrogram as.formula
axis barplot binomial colorRampPalette cor cov cov2cor dbinom dist
dlogis dnorm gaussian grey hclust head heat.colors is.ts lines lm
lowess mahalanobis make.link median model.frame model.matrix
model.response n2mfrow na.omit optim order.dendrogram par pcauchy
plogis pnorm points poisson predict pt qlogis qnorm qpois quantile
quasibinomial quasipoisson rbeta rbinom rchisq rgamma rmultinom
rnbinom rnorm rpois rt runif sd segments tail title uniroot
untangle.specials var write.table
Consider adding
importFrom("grDevices", "colorRampPalette", "grey", "heat.colors",
"n2mfrow")
importFrom("graphics", "abline", "axis", "barplot", "lines", "par",
"points", "segments", "title")
importFrom("stats", "as.dendrogram", "as.formula", "binomial", "cor",
"cov", "cov2cor", "dbinom", "dist", "dlogis", "dnorm",
"gaussian", "hclust", "is.ts", "lm", "lowess",
"mahalanobis", "make.link", "median", "model.frame",
"model.matrix", "model.response", "na.omit", "optim",
"order.dendrogram", "pcauchy", "plogis", "pnorm", "poisson",
"predict", "pt", "qlogis", "qnorm", "qpois", "quantile",
"quasibinomial", "quasipoisson", "rbeta", "rbinom",
"rchisq", "rgamma", "rmultinom", "rnbinom", "rnorm",
"rpois", "rt", "runif", "sd", "uniroot", "var")
importFrom("utils", "head", "tail", "write.table")
to your NAMESPACE file.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [17s/25s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [24s/31s] OK
Running ‘missing_data.frame.R’ [12s/15s]
Running ‘missing_variable.R’ [11s/14s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [117s/106s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE