• using R version 3.6.1 Patched (2019-08-21 r77053)
• using platform: x86_64-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘RxODE/DESCRIPTION’ ... OK
• this is package ‘RxODE’ version ‘0.9.1-3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘installr’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘RxODE’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  Namespace in Imports field not imported from: ‘n1qn1’
    All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [39s/47s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [22s/25s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [86s/99s] ERROR
    Running ‘testthat.R’ [86s/98s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > Sys.setenv("R_TESTS" = "")
    > library(testthat)
    > library(RxODE)
    > test_check("RxODE")
    ── 1. Error: Issue #56 (@test-issue-56.R#9) ───────────────────────────────────
    Error building model
    1: RxODE(model = ode, modName = "m1", wd = "/tmp") at testthat/test-issue-56.R:9
    2: .env$compile()
    3: with(<environment>, {
           .lwd <- getwd()
           if (!file.exists(wd))
               dir.create(wd, recursive = TRUE)
           if (file.exists(wd))
               setwd(wd)
           on.exit(setwd(.lwd))
           if (missing.modName) {
               .rxDll <- RxODE::rxCompile(.mv, extraC = extraC, debug = debug, package = NULL)
           }
           else {
               .rxDll <- RxODE::rxCompile(.mv, dir = mdir, extraC = extraC, debug = debug,
                   modName = modName, package = NULL)
           }
           assign("rxDll", .rxDll, envir = <environment>)
           assign(".mv", .rxDll$modVars, envir = <environment>)
       })
    4: with.default(<environment>, {
           .lwd <- getwd()
           if (!file.exists(wd))
               dir.create(wd, recursive = TRUE)
           if (file.exists(wd))
               setwd(wd)
           on.exit(setwd(.lwd))
           if (missing.modName) {
               .rxDll <- RxODE::rxCompile(.mv, extraC = extraC, debug = debug, package = NULL)
           }
           else {
               .rxDll <- RxODE::rxCompile(.mv, dir = mdir, extraC = extraC, debug = debug,
                   modName = modName, package = NULL)
           }
           assign("rxDll", .rxDll, envir = <environment>)
           assign(".mv", .rxDll$modVars, envir = <environment>)
       })
    5: eval(substitute(expr), data, enclos = parent.frame())
    6: eval(substitute(expr), data, enclos = parent.frame())
    7: RxODE::rxCompile(.mv, dir = mdir, extraC = extraC, debug = debug, modName = modName,
           package = NULL)
    8: rxCompile.rxModelVars(.mv, dir = mdir, extraC = extraC, debug = debug, modName = modName,
           package = NULL)
    9: .badBuild("Error building model")
    10: stop(msg, call. = FALSE)
    
    [====|====|====|====|====|====|====|====|====|====
    [====|====|====|====|====|====|====|====|====|====Error : Could not find package root.
    ══ testthat results ═══════════════════════════════════════════════════════════
    [ OK: 1045 | SKIPPED: 1 | WARNINGS: 1 | FAILED: 1 ]
    1. Error: Issue #56 (@test-issue-56.R#9)
    
    Error: testthat unit tests failed
    Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [102s/121s] WARNING
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘RxODE-cmt.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-cmt.Rmd’
  
  --- re-building ‘RxODE-covariates.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  udunits system database from /usr/local/share/udunits
  --- finished re-building ‘RxODE-covariates.Rmd’
  
  --- re-building ‘RxODE-data-frame.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  udunits system database from /usr/local/share/udunits
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  --- finished re-building ‘RxODE-data-frame.Rmd’
  
  --- re-building ‘RxODE-events.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-events.Rmd’
  
  --- re-building ‘RxODE-intro.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-intro.Rmd’
  
  --- re-building ‘RxODE-model-types.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  Quitting from lines 65-68 (RxODE-model-types.Rmd)
  Error: processing vignette 'RxODE-model-types.Rmd' failed with diagnostics:
  there is no package called 'webshot'
  --- failed re-building ‘RxODE-model-types.Rmd’
  
  --- re-building ‘RxODE-rxUse.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-rxUse.Rmd’
  
  --- re-building ‘RxODE-shiny.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-shiny.Rmd’
  
  --- re-building ‘RxODE-stiff.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-stiff.Rmd’
  
  --- re-building ‘RxODE-syntax.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-syntax.Rmd’
  
  --- re-building ‘RxODE-transit-compartments.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-transit-compartments.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘RxODE-model-types.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs