• using R version 3.6.1 Patched (2019-10-18 r77322)
• using platform: i386-pc-solaris2.10 (32-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘RxODE/DESCRIPTION’ ... OK
• this is package ‘RxODE’ version ‘0.9.1-4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘installr’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘RxODE’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [42s/54s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [20s/24s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [92s/106s] OK
    Running ‘testthat.R’ [92s/105s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [113s/133s] WARNING
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘RxODE-cmt.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-cmt.Rmd’
  
  --- re-building ‘RxODE-covariates.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  udunits system database from /usr/local/share/udunits
  --- finished re-building ‘RxODE-covariates.Rmd’
  
  --- re-building ‘RxODE-data-frame.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  udunits system database from /usr/local/share/udunits
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  --- finished re-building ‘RxODE-data-frame.Rmd’
  
  --- re-building ‘RxODE-events.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-events.Rmd’
  
  --- re-building ‘RxODE-intro.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-intro.Rmd’
  
  --- re-building ‘RxODE-model-types.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  Quitting from lines 65-68 (RxODE-model-types.Rmd)
  Error: processing vignette 'RxODE-model-types.Rmd' failed with diagnostics:
  there is no package called 'webshot'
  --- failed re-building ‘RxODE-model-types.Rmd’
  
  --- re-building ‘RxODE-rxUse.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-rxUse.Rmd’
  
  --- re-building ‘RxODE-shiny.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-shiny.Rmd’
  
  --- re-building ‘RxODE-stiff.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-stiff.Rmd’
  
  --- re-building ‘RxODE-syntax.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-syntax.Rmd’
  
  --- re-building ‘RxODE-transit-compartments.Rmd’ using rmarkdown
  Warning in engine$weave(file, quiet = quiet, encoding = enc) :
    Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
  --- finished re-building ‘RxODE-transit-compartments.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘RxODE-model-types.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 WARNING, 1 NOTE