• using R version 4.0.0 alpha (2020-04-01 r78130)
  • using platform: x86_64-apple-darwin17.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘tigger/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘tigger’ version ‘0.4.0’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘tigger’ can be installed ... [15s/21s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [7s/9s] OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [17s/25s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [0s/1s] NONE
      ‘Tigger-Vignette.Rmd’ using ‘UTF-8’... [0s/1s] OK
  • checking re-building of vignette outputs ... [31s/43s] WARNING
    Error(s) in re-building vignettes:
    --- re-building ‘Tigger-Vignette.Rmd’ using rmarkdown
    Loading required package: ggplot2

    Attaching package: 'dplyr'

    The following objects are masked from 'package:stats':

        filter, lag

    The following objects are masked from 'package:base':

        intersect, setdiff, setequal, union

    Warning: unnest() has a new interface. See ?unnest for details.
    Try `df %>% unnest(c(ALLELES, COUNTS))`, with `mutate()` if needed
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘Tigger-Vignette.Rmd’

    SUMMARY: processing the following file failed:
      ‘Tigger-Vignette.Rmd’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 WARNING