• using R version 4.0.0 alpha (2020-04-01 r78130)
  • using platform: x86_64-apple-darwin17.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘TDAstats/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘TDAstats’ version ‘0.4.1’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘TDAstats’ can be installed ... [14s/19s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [3s/4s] OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking compiled code ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [1s/2s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [3s/4s] OK
      Running ‘testthat.R’ [2s/3s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [1s/1s] NONE
      ‘inference.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘inputformat.Rmd’ using ‘UTF-8’... [0s/0s] OK
      ‘intro.Rmd’ using ‘UTF-8’... [0s/0s] OK
  • checking re-building of vignette outputs ... [10s/16s] WARNING
    Error(s) in re-building vignettes:
    --- re-building ‘inference.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'inference.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘inference.Rmd’

    --- re-building ‘inputformat.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'inputformat.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘inputformat.Rmd’

    --- re-building ‘intro.Rmd’ using rmarkdown
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    dyld: Symbol not found: ____chkstk_darwin
      Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
      Expected in: /usr/lib/libSystem.B.dylib

    Error: processing vignette 'intro.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘intro.Rmd’

    SUMMARY: processing the following files failed:
      ‘inference.Rmd’ ‘inputformat.Rmd’ ‘intro.Rmd’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 WARNING