* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘zonohedra’ ...
** package ‘zonohedra’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpdnHSGx/R.INSTALL23428665f4df40/zonohedra/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse.c -o collapse.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dbl_dig.c -o dbl_dig.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dupAtomMatHash.cpp -o dupAtomMatHash.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linking.c -o linking.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matdat.c -o matdat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matroid.c -o matroid.o
matroid.c: In function ‘trivialhypers2’:
matroid.c:1397:26: warning: ‘pmax[0]’ may be used uninitialized [-Wmaybe-uninitialized]
1397 | INTEGER(svec)[0] = pmax[0] ;
| ~~~~~~~~~~~~~~~~~^~~~~~~~~
matroid.c:1342:13: note: ‘pmax[0]’ was declared here
1342 | int pmax[2];
| ^~~~
matroid.c:1398:26: warning: ‘pmax[1]’ may be used uninitialized [-Wmaybe-uninitialized]
1398 | INTEGER(svec)[1] = pmax[1] ;
| ~~~~~~~~~~~~~~~~~^~~~~~~~~
matroid.c:1342:13: note: ‘pmax[1]’ was declared here
1342 | int pmax[2];
| ^~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pgram.c -o pgram.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trans2.c -o trans2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transitions.c -o transitions.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zonohedron.c -o zonohedron.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o zonohedra.so collapse.o dbl_dig.o dupAtomMatHash.o init.o linking.o matdat.o matroid.o pgram.o trans2.o transitions.o utils.o zonohedron.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpdnHSGx/R.INSTALL23428665f4df40/zonohedra/src'
make[1]: Entering directory '/tmp/RtmpdnHSGx/R.INSTALL23428665f4df40/zonohedra/src'
make[1]: Leaving directory '/tmp/RtmpdnHSGx/R.INSTALL23428665f4df40/zonohedra/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-zonohedra/00new/zonohedra/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘zonohedra’
finding HTML links ... done
boundarypgramdata html
genlist-print html
genlist html
grpDuplicated html
inside html
inside2trans html
invertboundary html
lintransform html
matroid-getters html
matroid-print html
matroid-props html
matroid html
minkowskisum html
plot2trans html
plothighertrans html
plotpolygon html
rank html
raytrace2trans html
section2trans html
simplify html
spherize html
support html
symmetrize html
transitionsdf html
zonogon-getmetrics html
zonogon-invert html
zonogon-plot html
zonogon-raytrace html
zonogon-section html
zonogon html
zonohedra-package html
zonohedron-getmetrics html
zonohedron-plot html
zonohedron-raytrace html
zonohedron-section html
zonohedron html
zonoseg-invert html
zonoseg html
zonotope-getters html
zonotope-props html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘zonohedra’ as ‘zonohedra_0.2-2_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (zonohedra)