Install log for 'xsdm'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘xsdm’ ...
** this is package ‘xsdm’ version ‘1.0.2’
** package ‘xsdm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-15 (Debian 15.3.0-2) 15.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXbOoLd/R.INSTALL9f14741da3d99/xsdm/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c expm_skew.cpp -o expm_skew.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c like_ltsg.cpp -o like_ltsg.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c log_prob_detect.cpp -o log_prob_detect.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c loglik_bio.cpp -o loglik_bio.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c loglik_math.cpp -o loglik_math.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c loglik_math_xptr.cpp -o loglik_math_xptr.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c loglik_math_xptr_cpp.cpp -o loglik_math_xptr_cpp.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math_to_bio.cpp -o math_to_bio.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ucminfcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DRCPP_PARALLEL_USE_TBB=1 -Ivendor/xtl -Ivendor/xsimd -Ivendor/xtensor -fpic  -g -O2 -Wall -pedantic -mtune=native   -c solve_lsap.cpp -o solve_lsap.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o xsdm.so RcppExports.o expm_skew.o like_ltsg.o log_prob_detect.o loglik_bio.o loglik_math.o loglik_math_xptr.o loglik_math_xptr_cpp.o math_to_bio.o solve_lsap.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXbOoLd/R.INSTALL9f14741da3d99/xsdm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXbOoLd/R.INSTALL9f14741da3d99/xsdm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXbOoLd/R.INSTALL9f14741da3d99/xsdm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-xsdm/00new/xsdm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘xsdm’
    finding HTML links ... done
    bio_to_math                             html  
    build_orthogonal_matrix                 html  
    convert_equivalence_class               html  
    create_mask                             html  
    create_param_vector_masked              html  
    dist_between_params                     html  
    env_data_array                          html  
    example_1                               html  
    example_2                               html  
    example_3                               html  
    expit                                   html  
    extract_orthogonal_matrix_parameters    html  
    get_start_parms_                        html  
    habitat_suitability                     html  
    interpret_parameters                    html  
    like_ltsg                               html  
    like_neg_ltsgr                          html  
    like_neg_ltsgr_r                        html  
    log1mexp                                html  
    log1pexp                                html  
    log_prob_detect                         html  
    log_prob_detect_cpp                     html  
    loglik_bio                              html  
    loglik_bio_cpp                          html  
    loglik_math                             html  
    loglik_math_cpp                         html  
    make_mask_names                         html  
    math_to_bio                             html  
    num_env_var                             html  
    num_par                                 html  
    optimize_likelihood                     html  
    optimize_loglik_math_                   html  
    profile_likelihood                      html  
    profile_one_side_                       html  
    resolve_xptr_grad_control_              html  
    start_parms                             html  
    vsp                                     html  
    xsdm-package                            html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xsdm)