* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘visPedigree’ ...
** this is package ‘visPedigree’ version ‘1.8.1’
** package ‘visPedigree’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzOLkHD/R.INSTALL211b962e5986c/visPedigree/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c pedigree_calculators.cpp -o pedigree_calculators.o
pedigree_calculators.cpp: In function ‘arma::mat cpp_calculate_D(Rcpp::IntegerVector, Rcpp::IntegerVector, const arma::mat&)’:
pedigree_calculators.cpp:474:18: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
474 | if (A.n_rows != n || A.n_cols != n) {
| ~~~~~~~~~^~~~
pedigree_calculators.cpp:474:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
474 | if (A.n_rows != n || A.n_cols != n) {
| ~~~~~~~~~^~~~
pedigree_calculators.cpp: In function ‘arma::vec cpp_solve_A(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, arma::vec)’:
pedigree_calculators.cpp:586:56: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
586 | if (dam.size() != n || dii.size() != n || b.size() != n) {
| ~~~~~~~~~^~~~
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o visPedigree.so RcppExports.o pedigree_calculators.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzOLkHD/R.INSTALL211b962e5986c/visPedigree/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzOLkHD/R.INSTALL211b962e5986c/visPedigree/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzOLkHD/R.INSTALL211b962e5986c/visPedigree/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-visPedigree/00new/visPedigree/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘visPedigree’
finding HTML links ... done
apply_node_styles html
as_tidyped html
big_family_size_ped html
build_ped_meta html
compact_ped_for_matrix html
compact_pedigree html
complex_ped html
deep_ped html
ensure_complete_tidyped html
ensure_tidyped html
expand_pedmat html
fade_cols html
finalize_graph html
generate_graph_structure html
get_highlight_ids html
half_founder_ped html
has_candidates html
has_inbreeding html
inbred_ped html
inbreed html
inject_missing_parents html
is_complete_pedigree html
is_tidyped html
loop_ped html
new_tidyped html
ped2igraph html
pedancestry html
pedcontrib html
pedecg html
pedfclass html
pedgenint html
pedhalflife html
pediv html
pedmat html
pedmeta html
pedne html
pedpartial html
pedrel html
pedstats html
pedsubpop html
plot.tidyped html
plot_ped_igraph html
prepare_initial_nodes html
prepare_ped_graph html
print.pedcontrib html
print.pediv html
print.pedstats html
print.summary.tidyped html
print.tidyped html
query_relationship html
repeloverlap html
require_complete_pedigree html
simple_ped html
small_ped html
splitped html
sub-.tidyped html
summary.tidyped html
summary_pedmat html
tidyped html
validate_tidyped html
vismat html
visped html
vispstat html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (visPedigree)