* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘vegtable’ ... ** this is package ‘vegtable’ version ‘0.1.8’ ** package ‘vegtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘vegtable’ finding HTML links ... done Extract html Kenya_veg-data html Wetlands-data html add_releves html aspect_conv-data html braun_blanquet-data html check_args html clean html coerce-methods html count_taxa html Rd warning: count_taxa.Rd:52: missing link ‘taxlist-class’ cover_trans html coverconvert html crosstable html df2coverconvert html df2vegtable html dune_veg-data html format_F2 html header html layers2samples html make_cocktail html Rd warning: make_cocktail.Rd:141: missing link ‘taxlist-class’ Rd warning: make_cocktail.Rd:79: missing link ‘taxlist-class’ names html new_relation html relation2heder html rewrite_formulas html shaker-class html subset html Rd warning: subset.Rd:27: missing link ‘taxlist-class’ summary html Rd warning: summary.Rd:59: missing link ‘taxlist-class’ Rd warning: summary.Rd:41: missing link ‘taxlist-class’ taxa2samples html trait_stats html tv2vegtable html Rd warning: tv2vegtable.Rd:50: missing link ‘taxlist-class’ Rd warning: tv2vegtable.Rd:35: missing link ‘read.dbf’ update_det html used_synonyms html Rd warning: used_synonyms.Rd:27: missing link ‘get_children’ Rd warning: used_synonyms.Rd:31: missing link ‘get_parents’ Rd warning: used_synonyms.Rd:47: missing link ‘taxlist-class’ Rd warning: used_synonyms.Rd:72: missing link ‘accepted_name’ veg_aggregate html veg_diversity html veg_relation html vegtable-class html Rd warning: vegtable-class.Rd:26: missing link ‘taxlist-class’ Rd warning: vegtable-class.Rd:35: missing link ‘taxlist-class’ vegtable_stat html write_juice html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vegtable)