* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘vapour’ ...
** package ‘vapour’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: gcc-13
configure: CXX: g++-13 -std=gnu++17
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.8.4
checking GDAL version >= 2.0.1... yes
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc-13 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.8.4
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.3.1
configure: LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal
configure: Package LIBS: -L/usr/lib/x86_64-linux-gnu -lgdal -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpM8nNek/R.INSTALL1fa9bc79a6c6e2/vapour/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 000-stream.cpp -o 000-stream.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 000-warpgeneral.cpp -o 000-warpgeneral.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_config.cpp -o 00_config.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_gdal.cpp -o 00_gdal.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_geometry.cpp -o 00_geometry.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_raster.cpp -o 00_raster.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_raster_block_io.cpp -o 00_raster_block_io.o
00_raster_block_io.cpp: In function ‘Rcpp::NumericVector vapour_read_raster_value_cpp(Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::CharacterVector)’:
00_raster_block_io.cpp:69:10: warning: variable ‘err’ set but not used [-Wunused-but-set-variable]
69 | CPLErr err;
| ^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_utils.cpp -o 00_utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00_vrt.cpp -o 00_vrt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I../inst/include/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c warp_file.cpp -o warp_file.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o vapour.so 000-stream.o 000-warpgeneral.o 00_config.o 00_gdal.o 00_geometry.o 00_raster.o 00_raster_block_io.o 00_utils.o 00_vrt.o RcppExports.o warp_file.o -L/usr/lib/x86_64-linux-gnu -lgdal -lproj -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpM8nNek/R.INSTALL1fa9bc79a6c6e2/vapour/src'
make[1]: Entering directory '/tmp/RtmpM8nNek/R.INSTALL1fa9bc79a6c6e2/vapour/src'
make[1]: Leaving directory '/tmp/RtmpM8nNek/R.INSTALL1fa9bc79a6c6e2/vapour/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-vapour/00new/vapour/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘vapour’
finding HTML links ... done
GDAL-library html
gdal_raster_data html
sst_c html
tas_wkt html
vapour-package html
vapour_create html
vapour_crs_is_lonlat html
vapour_geom_name html
vapour_geom_summary html
vapour_layer_extent html
vapour_layer_info html
vapour_layer_names html
vapour_raster_gcp html
vapour_raster_info html
vapour_read_fids html
vapour_read_fields html
vapour_read_geometry html
vapour_read_raster html
vapour_read_raster_block html
vapour_read_raster_raw html
vapour_report_fields html
vapour_sds_names html
vapour_set_config html
vapour_srs_wkt html
vapour_vrt html
vapour_vsi_list html
vapour_warp_raster html
vapour_warp_raster_raw html
vapour_write_raster_block html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vapour)