* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘uqsa’ ...
** this is package ‘uqsa’ version ‘0.8.0’
** package ‘uqsa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-3) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwZE9mS/R.INSTALL34223c5a9e15f0/uqsa/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concise.c -o concise.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gillespie.c -o gillespie.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lstrtod.c -o lstrtod.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c match_pow.c -o match_pow.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 `pkg-config --cflags gsl` -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c odeiv2.c -o odeiv2.o
odeiv2.c: In function ‘r_gsl_odeiv2_outer_fi’:
odeiv2.c:1041:20: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
1041 | if (status!=GSL_SUCCESS){
| ^
odeiv2.c:870:19: note: ‘status’ was declared here
870 | int i,j,k,status;
| ^~~~~~
gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o uqsa.so concise.o gillespie.o init.o lstrtod.o match_pow.o odeiv2.o -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwZE9mS/R.INSTALL34223c5a9e15f0/uqsa/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwZE9mS/R.INSTALL34223c5a9e15f0/uqsa/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwZE9mS/R.INSTALL34223c5a9e15f0/uqsa/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-uqsa/00new/uqsa/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘uqsa’
finding HTML links ... done
ABCSMC html
CRNN html
KLD html
abc_mcmc html
as_cme html
as_ode html
base-set html
c_path-set html
c_path html
change_temperature html
clear_yacas_environment html
column html
conservation_law_analysis html
dCopulaPrior html
dNormalPrior html
dUniformPrior html
defaultDistance html
determinePrefix html
exact_normal_kld html
experiments html
fi html
fitCopula html
formulae html
gNormalPrior html
gatherReplicas html
gatherSample html
generate_code html
gllf html
grapes-as-grapes html
grapes-at-grapes html
grapes-has-grapes html
grapes-otherwise-grapes html
gsa_binning html
gsa_saltelli html
gsl_odeiv2_CRNN html
gsl_odeiv2_fi html
highCor html
high_level_metropolis html
high_level_smmala html
kinetic_law_matrix html
linear_scale html
ll html
loadSample_mpi html
log10ParMap html
log10ParMapJac html
log2ParMap html
log2ParMapJac html
logLikelihoodFunc html
logParMap html
logParMapJac html
makeObjective html
mcmc html
mcmc_init html
mcmc_mpi html
method html
metropolis_update html
model_from_tsv html
modify-set html
name_method html
onlyCoefficients html
onlyNames html
parse_concise html
pcDist html
plot.experiments html
print.cme html
print.experiments html
print.mcmcVariable html
print.ode html
print.simulation html
print.unit_of_measurement html
rCopulaPrior html
rNormalPrior html
rUniformPrior html
replace_powers html
saltelli_prior html
scrnn html
sensitivity.graph html
shlib html
showPosterior html
simfi html
simple.unit html
simstoch html
simulator.c html
small html
smmala_update html
so_path-set html
so_path html
standard_error_matrix html
stoichiometric_matrix html
stoichiometry html
sub-.experiments html
sub-.simulation html
tune_step_size html
uncertainty html
unit.from.string html
unit.id html
unit_as_character html
units_from_table html
uqsa-package html
uqsa_example html
values html
write_and_compile html
write_c_code html
yJacobian html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (uqsa)