* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘umx’ ...
** package ‘umx’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘umx’
    finding HTML links ... done
    Fischbein_wt                            html  
    FishersMethod                           html  
    GFF                                     html  
    RMSEA.MxModel                           html  
    finding level-2 HTML links ... done

    RMSEA                                   html  
    RMSEA.summary.mxmodel                   html  
    SE_from_p                               html  
    bucks                                   html  
    deg2rad                                 html  
    dl_from_dropbox                         html  
    docData                                 html  
    extractAIC.MxModel                      html  
    fin_JustifiedPE                         html  
    fin_NI                                  html  
    fin_interest                            html  
    fin_percent                             html  
    fin_ticker                              html  
    fin_valuation                           html  
    geometric_mean                          html  
    ggAddR                                  html  
    harmonic_mean                           html  
    install.OpenMx                          html  
    iqdat                                   html  
    libs                                    html  
    loadings.MxModel                        html  
    loadings                                html  
    noNAs                                   html  
    oddsratio                               html  
    plot.MxLISRELModel                      html  
    plot.MxModel                            html  
    plot.MxModelTwinMaker                   html  
    plot.percent                            html  
    power.ACE.test                          html  
    print.RMSEA                             html  
    print.oddsratio                         html  
    print.percent                           html  
    print.reliability                       html  
    prolific_anonymize                      html  
    prolific_check_ID                       html  
    prolific_read_demog                     html  
    qm                                      html  
    rad2deg                                 html  
    reliability                             html  
    residuals.MxModel                       html  
    tmx_genotypic_effect                    html  
    tmx_is.identified                       html  
    tmx_show.MxMatrix                       html  
    tmx_show.MxModel                        html  
    tmx_show                                html  
    umx-deprecated                          html  
    umx                                     html  
    umxACE                                  html  
    umxACEcov                               html  
    umxACEv                                 html  
    umxAPA                                  html  
    umxAlgebra                              html  
    umxBrownie                              html  
    umxCI                                   html  
    umxCI_boot                              html  
    umxCLPM                                 html  
    umxCP                                   html  
    umxCompare                              html  
    umxConfint                              html  
    umxCov2cor                              html  
    umxDiagnose                             html  
    umxDiffMZ                               html  
    umxDiscTwin                             html  
    umxDoC                                  html  
    umxDoCp                                 html  
    umxEFA                                  html  
    umxEquate                               html  
    umxExamples                             html  
    umxExpCov                               html  
    umxExpMeans                             html  
    umxFactor                               html  
    umxFactorScores                         html  
    umxFitIndices                           html  
    umxFixAll                               html  
    umxGetLatents                           html  
    umxGetManifests                         html  
    umxGetModel                             html  
    umxGetParameters                        html  
    umxGxE                                  html  
    umxGxE_window                           html  
    umxGxEbiv                               html  
    umxHetCor                               html  
    umxIP                                   html  
    umxJiggle                               html  
    umxLav2RAM                              html  
    umxMI                                   html  
    umxMRDoC                                html  
    umxMatrix                               html  
    umxMatrixFree                           html  
    umxModel                                html  
    umxModelNames                           html  
    umxModify                               html  
    umxParameters                           html  
    umxParan                                html  
    umxPath                                 html  
    umxPlot                                 html  
    umxPlotACE                              html  
    umxPlotACEcov                           html  
    umxPlotACEv                             html  
    umxPlotCP                               html  
    umxPlotDoC                              html  
    umxPlotFun                              html  
    umxPlotGxE                              html  
    umxPlotGxEbiv                           html  
    umxPlotIP                               html  
    umxPlotSexLim                           html  
    umxPlotSimplex                          html  
    umxPower                                html  
    umxRAM                                  html  
    umxRAM2Lav                              html  
    umxReduce                               html  
    umxReduceACE                            html  
    umxReduceGxE                            html  
    umxRenameMatrix                         html  
    umxRotate.MxModelCP                     html  
    umxRotate                               html  
    umxRun                                  html  
    umxSetParameters                        html  
    umxSexLim                               html  
    umxSimplex                              html  
    umxSummarizeTwinData                    html  
    umxSummary.MxModel                      html  
    umxSummary                              html  
    umxSummaryACE                           html  
    umxSummaryACEcov                        html  
    umxSummaryACEv                          html  
    umxSummaryCP                            html  
    umxSummaryDoC                           html  
    umxSummaryGxE                           html  
    umxSummaryGxEbiv                        html  
    umxSummaryIP                            html  
    umxSummaryMRDoC                         html  
    umxSummarySexLim                        html  
    umxSummarySimplex                       html  
    umxSuperModel                           html  
    umxThresholdMatrix                      html  
    umxTwinMaker                            html  
    umxTwoStage                             html  
    umxUnexplainedCausalNexus               html  
    umxVersion                              html  
    umxWeightedAIC                          html  
    umx_APA_pval                            html  
    umx_aggregate                           html  
    umx_apply                               html  
    umx_array_shift                         html  
    umx_as_numeric                          html  
    umx_check                               html  
    umx_check_OS                            html  
    umx_check_model                         html  
    umx_check_names                         html  
    umx_check_parallel                      html  
    umx_cont_2_quantiles                    html  
    umx_cor                                 html  
    umx_explode                             html  
    umx_explode_twin_names                  html  
    umx_file_load_pseudo                    html  
    umx_find_object                         html  
    umx_fun_mean_sd                         html  
    umx_get_bracket_addresses               html  
    umx_get_checkpoint                      html  
    umx_get_options                         html  
    umx_grep                                html  
    umx_has_CIs                             html  
    umx_has_been_run                        html  
    umx_has_means                           html  
    umx_has_square_brackets                 html  
    umx_is_MxData                           html  
    umx_is_MxMatrix                         html  
    umx_is_MxModel                          html  
    umx_is_RAM                              html  
    umx_is_class                            html  
    umx_is_cov                              html  
    umx_is_endogenous                       html  
    umx_is_exogenous                        html  
    umx_is_numeric                          html  
    umx_is_ordered                          html  
    umx_long2wide                           html  
    umx_lower.tri                           html  
    umx_lower2full                          html  
    umx_make                                html  
    umx_make_MR_data                        html  
    umx_make_TwinData                       html  
    umx_make_fake_data                      html  
    umx_make_raw_from_cov                   html  
    umx_make_sql_from_excel                 html  
    umx_make_twin_data_nice                 html  
    umx_means                               html  
    umx_merge_randomized_columns            html  
    umx_move_file                           html  
    umx_msg                                 html  
    umx_names                               html  
    umx_open                                html  
    umx_open_CRAN_page                      html  
    umx_pad                                 html  
    umx_paste_names                         html  
    umx_polychoric                          html  
    umx_polypairwise                        html  
    umx_polytriowise                        html  
    umx_print                               html  
    umx_r_test                              html  
    umx_read_lower                          html  
    umx_rename                              html  
    umx_rename_file                         html  
    umx_reorder                             html  
    umx_residualize                         html  
    umx_rot                                 html  
    umx_round                               html  
    umx_scale                               html  
    umx_scale_wide_twin_data                html  
    umx_score_scale                         html  
    umx_select_valid                        html  
    umx_set_auto_plot                       html  
    umx_set_auto_run                        html  
    umx_set_checkpoint                      html  
    umx_set_condensed_slots                 html  
    umx_set_cores                           html  
    umx_set_data_variance_check             html  
    umx_set_dollar_symbol                   html  
    umx_set_optimization_options            html  
    umx_set_optimizer                       html  
    umx_set_plot_file_suffix                html  
    umx_set_plot_format                     html  
    umx_set_plot_use_hrbrthemes             html  
    umx_set_separator                       html  
    umx_set_silent                          html  
    umx_set_table_format                    html  
    umx_stack                               html  
    umx_standardize                         html  
    umx_str_chars                           html  
    umx_str_from_object                     html  
    umx_string_to_algebra                   html  
    umx_strings2numeric                     html  
    umx_time                                html  
    umx_trim                                html  
    umx_var                                 html  
    umx_wide2long                           html  
    umx_write_to_clipboard                  html  
    us_skinfold_data                        html  
    xmuHasSquareBrackets                    html  
    xmuLabel                                html  
    xmuLabel_MATRIX_Model                   html  
    xmuLabel_Matrix                         html  
    xmuLabel_RAM_Model                      html  
    xmuMI                                   html  
    xmuMakeDeviationThresholdsMatrices      html  
    xmuMakeOneHeadedPathsFromPathList       html  
    xmuMakeTwoHeadedPathsFromPathList       html  
    xmuMaxLevels                            html  
    xmuMinLevels                            html  
    xmuPropagateLabels                      html  
    xmuRAM2Ordinal                          html  
    xmuTwinSuper_Continuous                 html  
    xmuTwinSuper_NoBinary                   html  
    xmuTwinUpgradeMeansToCovariateModel     html  
    xmuValues                               html  
    xmu_CI_merge                            html  
    xmu_CI_stash                            html  
    xmu_DF_to_mxData_TypeCov                html  
    xmu_PadAndPruneForDefVars               html  
    xmu_bracket_address2rclabel             html  
    xmu_cell_is_on                          html  
    xmu_check_levels_identical              html  
    xmu_check_needs_means                   html  
    xmu_check_variance                      html  
    xmu_clean_label                         html  
    xmu_data_missing                        html  
    xmu_data_swap_a_block                   html  
    xmu_describe_data_WLS                   html  
    xmu_dot_define_shapes                   html  
    xmu_dot_make_paths                      html  
    xmu_dot_make_residuals                  html  
    xmu_dot_maker                           html  
    xmu_dot_mat2dot                         html  
    xmu_dot_move_ranks                      html  
    xmu_dot_rank                            html  
    xmu_dot_rank_str                        html  
    xmu_extract_column                      html  
    xmu_get_CI                              html  
    xmu_lavaan_process_group                html  
    xmu_make_TwinSuperModel                 html  
    xmu_make_bin_cont_pair_data             html  
    xmu_make_mxData                         html  
    xmu_match.arg                           html  
    xmu_name_from_lavaan_str                html  
    xmu_path2twin                           html  
    xmu_path_regex                          html  
    xmu_print_algebras                      html  
    xmu_rclabel_2_bracket_address           html  
    xmu_safe_run_summary                    html  
    xmu_set_sep_from_suffix                 html  
    xmu_show_fit_or_comparison              html  
    xmu_simplex_corner                      html  
    xmu_standardize_ACE                     html  
    xmu_standardize_ACEcov                  html  
    xmu_standardize_ACEv                    html  
    xmu_standardize_CP                      html  
    xmu_standardize_IP                      html  
    xmu_standardize_RAM                     html  
    xmu_standardize_SexLim                  html  
    xmu_standardize_Simplex                 html  
    xmu_start_value_list                    html  
    xmu_starts                              html  
    xmu_summary_RAM_group_parameters        html  
    xmu_twin_add_WeightMatrices             html  
    xmu_twin_check                          html  
    xmu_twin_get_var_names                  html  
    xmu_twin_make_def_means_mats_and_alg    html  
    xmu_twin_upgrade_selDvs2SelVars         html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (umx)