* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘transitiontrees’ ...
** this is package ‘transitiontrees’ version ‘0.1.2’
** package ‘transitiontrees’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘transitiontrees’
    finding HTML links ... done
    ai_long                                 html  
    as.data.frame.transitiontrees           html  
    as.data.frame.transitiontrees_bootstrap
                                            html  
    as.data.frame.transitiontrees_comparison
                                            html  
    as.data.frame.transitiontrees_group     html  
    as.data.frame.transitiontrees_group_comparison
                                            html  
    bootstrap_pathways                      html  
    common_pathways                         html  
    compare_groups                          html  
    compare_pruning                         html  
    compare_smoothing                       html  
    compare_trees                           html  
    context_tree                            html  
    divergent_pathways                      html  
    engagement                              html  
    generate_sequences                      html  
    group_regulation_long                   html  
    impute_sequences                        html  
    logLik.transitiontrees                  html  
    mine_contexts                           html  
    mine_sequences                          html  
    model_fit                               html  
    n_nodes                                 html  
    nobs.transitiontrees                    html  
    pathway_exists                          html  
    perplexity                              html  
    plot.transitiontrees                    html  
    plot.transitiontrees_bootstrap          html  
    plot.transitiontrees_comparison         html  
    plot.transitiontrees_group              html  
    plot.transitiontrees_group_comparison   html  
    plot.transitiontrees_tune               html  
    plot_difference                         html  
    plot_distributions                      html  
    plot_divergence                         html  
    plot_pathway_resamples                  html  
    plot_pathways                           html  
    plot_predictive                         html  
    plot_pruning                            html  
    plot_trajectories                       html  
    predict.transitiontrees                 html  
    prepare_input                           html  
    print.summary.transitiontrees           html  
    print.transitiontrees                   html  
    print.transitiontrees_bootstrap         html  
    print.transitiontrees_comparison        html  
    print.transitiontrees_group             html  
    print.transitiontrees_group_comparison
                                            html  
    print.transitiontrees_tune              html  
    prune_tree                              html  
    query_pathway                           html  
    score_positions                         html  
    score_sequences                         html  
    sharp_pathways                          html  
    simulate.transitiontrees                html  
    smooth_tree                             html  
    subtree                                 html  
    summary.transitiontrees                 html  
    summary.transitiontrees_bootstrap       html  
    summary.transitiontrees_group_comparison
                                            html  
    trajectories                            html  
    transitiontrees-package                 html  
    tree_dependence                         html  
    tree_distance                           html  
    tree_pathways                           html  
    tune_tree                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (transitiontrees)