* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘trajeR’ ...
** this is package ‘trajeR’ version ‘1.0’
** package ‘trajeR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-15 (Debian 15.3.0-2) 15.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz4Chnv/R.INSTALL3e68be4f7db276/trajeR/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Beta.cpp -o Beta.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CensoredNormal.cpp -o CensoredNormal.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CensoredNormalMatrixEM.cpp -o CensoredNormalMatrixEM.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CommonFunction.cpp -o CommonFunction.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c LOGITMatrixEM.cpp -o LOGITMatrixEM.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Logit.cpp -o Logit.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Pois.cpp -o Pois.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ZIP.cpp -o ZIP.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ZIPMatrixEM.cpp -o ZIPMatrixEM.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c multi.cpp -o multi.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o trajeR.so Beta.o CensoredNormal.o CensoredNormalMatrixEM.o CommonFunction.o LOGITMatrixEM.o Logit.o Pois.o RcppExports.o ZIP.o ZIPMatrixEM.o multi.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz4Chnv/R.INSTALL3e68be4f7db276/trajeR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz4Chnv/R.INSTALL3e68be4f7db276/trajeR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz4Chnv/R.INSTALL3e68be4f7db276/trajeR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-trajeR/00new/trajeR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘trajeR’
finding HTML links ... done
AvePP html
ConfIntT html
GroupProb html
GroupProfiles html
OCC html
adequacy html
confidenceInt html
dataNORM01 html
data_CNORM html
data_CNORM_Censored html
data_LOGIT html
data_ZIP html
diffaitbeta html
fait html
get_group_probabilities html
plot_trajectory_mult html
plotrajeR html
plotrajeR.Trajectory.BETA html
plotrajeR.Trajectory.CNORM html
plotrajeR.Trajectory.LOGIT html
plotrajeR.Trajectory.NL html
plotrajeR.Trajectory.POIS html
plotrajeR.Trajectory.ZIP html
print.Trajectory.BETA html
print.Trajectory.CNORM html
print.Trajectory.LOGIT html
print.Trajectory.NL html
print.Trajectory.POIS html
print.Trajectory.ZIP html
print.trajectory.mult html
propAssign html
trajeR.BETA html
trajeR.CNORM html
trajeR.LOGIT html
trajeR.NL html
trajeR.POIS html
trajeR html
trajeR.ZIP html
trajeRAIC html
trajeRBIC html
trajeRSH html
trajeR_mult html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (trajeR)