* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘tracerer’ ...
** package ‘tracerer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpJowPEf/R.INSTALL13048660982cf6/tracerer/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calc_act_cpp.cpp -o calc_act_cpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calc_std_error_of_mean_cpp.cpp -o calc_std_error_of_mean_cpp.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o tracerer.so RcppExports.o calc_act_cpp.o calc_std_error_of_mean_cpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJowPEf/R.INSTALL13048660982cf6/tracerer/src'
make[1]: Entering directory '/tmp/RtmpJowPEf/R.INSTALL13048660982cf6/tracerer/src'
make[1]: Leaving directory '/tmp/RtmpJowPEf/R.INSTALL13048660982cf6/tracerer/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-tracerer/00new/tracerer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘tracerer’
    finding HTML links ... done
    calc_act                                html  
    calc_act_cpp                            html  
    calc_act_r                              html  
    calc_ess                                html  
    calc_esses                              html  
    calc_geom_mean                          html  
    calc_hpd_interval                       html  
    calc_mode                               html  
    calc_std_error_of_mean_cpp              html  
    calc_stderr_mean                        html  
    calc_summary_stats                      html  
    calc_summary_stats_trace                html  
    calc_summary_stats_traces               html  
    check_trace                             html  
    count_trees_in_file                     html  
    cs_std_dev                              html  
    default_params_doc                      html  
    extract_operators_lines                 html  
    get_tracerer_path                       html  
    get_tracerer_paths                      html  
    get_tracerer_tempfilename               html  
    is_posterior                            html  
    is_trees_file                           html  
    is_trees_posterior                      html  
    parse_beast_log                         html  
    parse_beast_output_files                html  
    parse_beast_posterior                   html  
    parse_beast_state_operators             html  
    parse_beast_tracelog_file               html  
    parse_beast_trees                       html  
    remove_burn_in                          html  
    remove_burn_ins                         html  
    save_beast_estimates                    html  
    save_beast_trees                        html  
    tracerer-package                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tracerer)