* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘topolow’ ...
** this is package ‘topolow’ version ‘2.0.1’
** package ‘topolow’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘topolow’
    finding HTML links ... done
    Euclidify                               html  
    adaptive_MC_sampling                    html  
    analyze_network_structure               html  
    calculate_diagnostics                   html  
    calculate_prediction_interval           html  
    calculate_weighted_marginals            html  
    check_gaussian_convergence              html  
    clean_data                              html  
    color_palettes                          html  
    coordinates_to_matrix                   html  
    create_base_theme                       html  
    create_cv_folds                         html  
    create_diagnostic_plots                 html  
    create_topolow_map                      html  
    denv_data                               html  
    detect_outliers_mad                     html  
    error_calculator_comparison             html  
    euclidean_embedding                     html  
    example_positions                       html  
    extract_numeric_values                  html  
    generate_kde_samples                    html  
    get_grid                                html  
    ggsave_white_bg                         html  
    h3n2_data                               html  
    hiv_titers                              html  
    hiv_viruses                             html  
    initial_parameter_optimization          html  
    likelihood_function                     html  
    list_to_matrix                          html  
    log_transform_parameters                html  
    make_interactive                        html  
    new_aesthetic_config                    html  
    new_annotation_config                   html  
    new_dim_reduction_config                html  
    new_layout_config                       html  
    parameter_sensitivity_analysis          html  
    plot.parameter_sensitivity              html  
    plot.profile_likelihood                 html  
    plot.topolow_convergence                html  
    plot.topolow_diagnostics                html  
    plot_3d_mapping                         html  
    plot_cluster_mapping                    html  
    plot_network_structure                  html  
    plot_temporal_mapping                   html  
    print.parameter_sensitivity             html  
    print.profile_likelihood                html  
    print.topolow                           html  
    print.topolow_convergence               html  
    print.topolow_diagnostics               html  
    process_antigenic_data                  html  
    profile_likelihood                      html  
    profile_likelihood_result               html  
    reduce_dimensions                       html  
    run_adaptive_sampling                   html  
    save_plot                               html  
    scale_to_original_distances             html  
    scatterplot_fitted_vs_true              html  
    summary.topolow                         html  
    symmetric_to_nonsymmetric_matrix        html  
    table_to_matrix                         html  
    titers_list_to_matrix                   html  
    topolow-package                         html  
    validate_topolow_df                     html  
    vectorized_process_distance_matrix      html  
    weighted_kde                            html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (topolow)