* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘topmodel’ ...
** package ‘topmodel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpdXHbu1/R.INSTALL26878815b50dc4/topmodel/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c NS.c -o NS.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_flowlength.c -o c_flowlength.o
c_flowlength.c: In function ‘c_flowlength’:
c_flowlength.c:103:35: warning: ‘idown’ may be used uninitialized [-Wmaybe-uninitialized]
103 | flowi[flowlength] = i + idown;
| ~~^~~~~~~
c_flowlength.c:10:25: note: ‘idown’ was declared here
10 | int i,j,ii,jj,i2,j2,k,idown,jdown,orig_i,orig_j,flowlength,endflow;
| ^~~~~
c_flowlength.c:104:35: warning: ‘jdown’ may be used uninitialized [-Wmaybe-uninitialized]
104 | flowj[flowlength] = j + jdown;
| ~~^~~~~~~
c_flowlength.c:10:31: note: ‘jdown’ was declared here
10 | int i,j,ii,jj,i2,j2,k,idown,jdown,orig_i,orig_j,flowlength,endflow;
| ^~~~~
c_flowlength.c:101:34: warning: ‘divdown’ may be used uninitialized [-Wmaybe-uninitialized]
101 | distance[flowlength] = divdown;
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
c_flowlength.c:13:18: note: ‘divdown’ was declared here
13 | double max,div,divdown,exclude;
| ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_infiltration.c -o c_infiltration.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_sinkfill.c -o c_sinkfill.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_streamorder.c -o c_streamorder.o
c_streamorder.c: In function ‘c_streamorder’:
c_streamorder.c:73:15: warning: ‘max’ may be used uninitialized [-Wmaybe-uninitialized]
73 | if(((dem[i+ii][j+jj] - dem[i][j])/div) > max) {
| ^
c_streamorder.c:15:43: note: ‘max’ was declared here
15 | double upslope, downslope, div,exclude, max;
| ^~~
c_streamorder.c:134:39: warning: ‘idown’ may be used uninitialized [-Wmaybe-uninitialized]
134 | flowi[flowlength-1] = i + idown;
| ~~^~~~~~~
c_streamorder.c:12:23: note: ‘idown’ was declared here
12 | int i,j,ii,jj,i2,j2,idown,jdown,orig_i,orig_j,flowlength;
| ^~~~~
c_streamorder.c:135:39: warning: ‘jdown’ may be used uninitialized [-Wmaybe-uninitialized]
135 | flowj[flowlength-1] = j + jdown;
| ~~^~~~~~~
c_streamorder.c:12:29: note: ‘jdown’ was declared here
12 | int i,j,ii,jj,i2,j2,idown,jdown,orig_i,orig_j,flowlength;
| ^~~~~
c_streamorder.c:175:23: warning: ‘bifurc’ may be used uninitialized [-Wmaybe-uninitialized]
175 | if(bifurc == 0) {
| ^
c_streamorder.c:13:7: note: ‘bifurc’ was declared here
13 | int bifurc,order,endflow;
| ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_subcatch.c -o c_subcatch.o
c_subcatch.c: In function ‘c_subcatch’:
c_subcatch.c:112:37: warning: ‘idown’ may be used uninitialized [-Wmaybe-uninitialized]
112 | flowi[flowlength-1] = i + idown;
| ~~^~~~~~~
c_subcatch.c:11:7: note: ‘idown’ was declared here
11 | int idown,jdown,origin_i,origin_j,flowlength;
| ^~~~~
c_subcatch.c:113:37: warning: ‘jdown’ may be used uninitialized [-Wmaybe-uninitialized]
113 | flowj[flowlength-1] = j + jdown;
| ~~^~~~~~~
c_subcatch.c:11:13: note: ‘jdown’ was declared here
11 | int idown,jdown,origin_i,origin_j,flowlength;
| ^~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_topidx.c -o c_topidx.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c_topmodel.c -o c_topmodel.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c core_topmodel.c -o core_topmodel.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c get_f.c -o get_f.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c output.c -o output.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c param_init.c -o param_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c river.c -o river.o
river.c: In function ‘findrivers’:
river.c:142:28: warning: ‘idown’ may be used uninitialized [-Wmaybe-uninitialized]
142 | riveri[nriv] = i + idown;
| ~~^~~~~~~
river.c:24:13: note: ‘idown’ was declared here
24 | int i,j,k,idown,jdown,river_origin_i,river_origin_j,endriver,nriv;
| ^~~~~
river.c:143:28: warning: ‘jdown’ may be used uninitialized [-Wmaybe-uninitialized]
143 | riverj[nriv] = j + jdown;
| ~~^~~~~~~
river.c:24:19: note: ‘jdown’ was declared here
24 | int i,j,k,idown,jdown,river_origin_i,river_origin_j,endriver,nriv;
| ^~~~~
river.c:140:22: warning: ‘addist’ may be used uninitialized [-Wmaybe-uninitialized]
140 | dist[nriv] = addist;
| ~~~~~~~~~~~^~~~~~~~
river.c:28:15: note: ‘addist’ was declared here
28 | double max, addist, exclude, dist3;
| ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c startroutines.c -o startroutines.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topmodel_init.c -o topmodel_init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o topmodel.so NS.o c_flowlength.o c_infiltration.o c_sinkfill.o c_streamorder.o c_subcatch.o c_topidx.o c_topmodel.o core_topmodel.o get_f.o misc.o output.o param_init.o river.o startroutines.o topmodel_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpdXHbu1/R.INSTALL26878815b50dc4/topmodel/src'
make[1]: Entering directory '/tmp/RtmpdXHbu1/R.INSTALL26878815b50dc4/topmodel/src'
make[1]: Leaving directory '/tmp/RtmpdXHbu1/R.INSTALL26878815b50dc4/topmodel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-topmodel/00new/topmodel/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘topmodel’
finding HTML links ... done
NSeff html
flowlength html
huagrahuma html
huagrahuma.dem html
infiltration html
make.classes html
outlet html
river html
sinkfill html
subcatch html
topidx html
topmodel html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (topmodel)