• using R version 4.6.1 Patched (2026-07-27 r90311)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.3.0-1) 15.3.0     GNU Fortran (Debian 15.3.0-1) 15.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-29 21:45:39 UTC
• checking for file ‘tinyVAST/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘tinyVAST’ version ‘1.6.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘tinyVAST’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/10s] OK
• checking whether the package can be loaded with stated dependencies ... [7s/7s] OK
• checking whether the package can be unloaded cleanly ... [7s/8s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s/7s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/9s] OK
• checking loading without being on the library search path ... [7s/8s] OK
• checking whether startup messages can be suppressed ... [8s/9s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s/62s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [29s/39s] OK Examples with CPU (user + system) or elapsed time > 5s                      user system elapsed cAIC 6.676 0.299 8.740 add_mesh_covariates 3.312 0.080 5.114
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [84s/52s] OK   Running ‘testthat.R’ [84s/51s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [227s/296s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘dsem.Rmd’ using rmarkdown Read 5 records --- finished re-building ‘dsem.Rmd’ --- re-building ‘mgcv.Rmd’ using rmarkdown Quitting from mgcv.Rmd:106-110 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_dots_nonempty> Error in `plot()`: ! `...` must be empty. ✖ Problematic argument: • what = "p_g" --- Backtrace:     ▆  1. └─visreg::visreg(myfit, xvar = "group", what = "p_g")  2. └─visreg:::finalize_visreg(v, plot, ...)  3. ├─base::plot(v, ...)  4. └─visreg:::plot.visreg(v, ...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'mgcv.Rmd' failed with diagnostics: `...` must be empty. ✖ Problematic argument: • what = "p_g" --- failed re-building ‘mgcv.Rmd’ --- re-building ‘model-description.Rmd’ using rmarkdown [WARNING] Citeproc: citation wood_generalized_2006 not found --- finished re-building ‘model-description.Rmd’ --- re-building ‘multiple_data.Rmd’ using rmarkdown --- finished re-building ‘multiple_data.Rmd’ --- re-building ‘spatial.Rmd’ using rmarkdown --- finished re-building ‘spatial.Rmd’ --- re-building ‘spatial_factor_analysis.Rmd’ using rmarkdown --- finished re-building ‘spatial_factor_analysis.Rmd’ SUMMARY: processing the following file failed:   ‘mgcv.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [4s/6s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR