* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘tidylda’ ...
** this is package ‘tidylda’ version ‘0.1.1’
** package ‘tidylda’ successfully unpacked and MD5 sums checked
** using staged installation
configure: libatomic is available; adding -latomic
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’
using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG0c7B8/R.INSTALL288b230280b44/tidylda/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c warp_lda.cpp -o warp_lda.o
In file included from warp_lda.cpp:70:
matrix_conversions.h: In function ‘Rcpp::NumericMatrix vec_to_mat(const std::vector<std::vector<double> >&, const bool&)’:
matrix_conversions.h:82:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
82 | for (auto j = 0; j < n_cols; j++) {
| ~~^~~~~~~~
matrix_conversions.h:83:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
83 | for (auto k = 0; k < n_rows; k++) {
| ~~^~~~~~~~
matrix_conversions.h: In function ‘Rcpp::IntegerMatrix vec_to_mat(const std::vector<std::vector<long int> >&, const bool&)’:
matrix_conversions.h:106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
106 | for (auto j = 0; j < n_cols; j++) {
| ~~^~~~~~~~
matrix_conversions.h:107:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
107 | for (auto k = 0; k < n_rows; k++) {
| ~~^~~~~~~~
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o tidylda.so RcppExports.o init.o warp_lda.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -latomic -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG0c7B8/R.INSTALL288b230280b44/tidylda/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG0c7B8/R.INSTALL288b230280b44/tidylda/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG0c7B8/R.INSTALL288b230280b44/tidylda/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-tidylda/00new/tidylda/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘tidylda’
finding HTML links ... done
augment.tidylda html
calc_lambda html
calc_lda_r2 html
calc_prob_coherence html
check_result_size html
convert_dtm html
counts_cv html
eta_matrix html
eta_row_sums html
fit_lda_warp html
format_alpha html
format_eta html
generate_sample html
glance.tidylda html
initialize_topic_counts html
new_tidylda html
nih html
pad_vocabulary html
posterior html
predict.tidylda html
print.tidylda html
reexports html
refit.tidylda html
session_memory_limit html
summarize_topics html
tidy.tidylda html
tidy_dgcmatrix html
tidy_triplet html
tidylda-package html
tidylda html
tidylda_bridge html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidylda)