* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘tidygenomics’ ...
** this is package ‘tidygenomics’ version ‘0.1.2’
** package ‘tidygenomics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZehGOw/R.INSTALL1a021cf6b06d0/tidygenomics/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cluster_interval.cpp -o cluster_interval.o
cluster_interval.cpp: In function ‘Rcpp::IntegerVector cluster_interval(Rcpp::NumericVector, Rcpp::NumericVector, int)’:
cluster_interval.cpp:104:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |   for (int j = 0; j < indices.size(); j++) {
      |                   ~~^~~~~~~~~~~~~~~~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tidygenomics_init.c -o tidygenomics_init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o tidygenomics.so RcppExports.o cluster_interval.o tidygenomics_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZehGOw/R.INSTALL1a021cf6b06d0/tidygenomics/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZehGOw/R.INSTALL1a021cf6b06d0/tidygenomics/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZehGOw/R.INSTALL1a021cf6b06d0/tidygenomics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-tidygenomics/00new/tidygenomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘tidygenomics’
    finding HTML links ... done
    cluster_interval                        html  
    genome_cluster                          html  
    genome_complement                       html  
    genome_intersect                        html  
    genome_join_closest                     html  
    genome_subtract                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidygenomics)