* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘terra’ ...
** package ‘terra’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: gcc-13
configure: CXX: g++-13 -std=gnu++17
checking for gdal-config... /usr/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.8.4
checking GDAL version >= 2.0.1... yes
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.8.4
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.3.1
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
checking for geos-config... /usr/bin/geos-config
checking geos-config usability... yes
configure: GEOS: 3.12.1
checking GEOS version >= 3.4.0... yes
checking for geos_c.h... yes
checking geos: linking with -L/usr/lib/x86_64-linux-gnu -lgeos_c... yes
configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include
configure: Package LIBS: -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpIbn1q9/R.INSTALL2734b124655b82/terra/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppFunctions.cpp -o RcppFunctions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppModule.cpp -o RcppModule.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arith.cpp -o arith.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crs.cpp -o crs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distRaster.cpp -o distRaster.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c extract.cpp -o extract.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c file_utils.cpp -o file_utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c focal.cpp -o focal.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gcp.cpp -o gcp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdal_algs.cpp -o gdal_algs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdal_multidimensional.cpp -o gdal_multidimensional.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gdalio.cpp -o gdalio.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geodesic.c -o geodesic.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c geos_methods.cpp -o geos_methods.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c geosphere.cpp -o geosphere.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c math_utils.cpp -o math_utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mediancut.cpp -o mediancut.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c memory.cpp -o memory.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c movingWindow.cpp -o movingWindow.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ncdf.cpp -o ncdf.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ram.cpp -o ram.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c raster_methods.cpp -o raster_methods.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c raster_stats.cpp -o raster_stats.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rasterize.cpp -o rasterize.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read.cpp -o read.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_gdal.cpp -o read_gdal.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_ogr.cpp -o read_ogr.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample.cpp -o sample.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sort.cpp -o sort.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatBase.cpp -o spatBase.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatDataframe.cpp -o spatDataframe.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatFactor.cpp -o spatFactor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatRaster.cpp -o spatRaster.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatRasterMultiple.cpp -o spatRasterMultiple.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatSources.cpp -o spatSources.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatTime.cpp -o spatTime.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatVector.cpp -o spatVector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spatVector2.cpp -o spatVector2.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c string_utils.cpp -o string_utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vecmath.cpp -o vecmath.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vecmathse.cpp -o vecmathse.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vector_methods.cpp -o vector_methods.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write.cpp -o write.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_gdal.cpp -o write_gdal.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_ogr.cpp -o write_ogr.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o terra.so RcppExports.o RcppFunctions.o RcppModule.o arith.o crs.o distRaster.o distance.o extract.o file_utils.o focal.o gcp.o gdal_algs.o gdal_multidimensional.o gdalio.o geodesic.o geos_methods.o geosphere.o math_utils.o mediancut.o memory.o movingWindow.o ncdf.o ram.o raster_methods.o raster_stats.o rasterize.o read.o read_gdal.o read_ogr.o sample.o sort.o spatBase.o spatDataframe.o spatFactor.o spatRaster.o spatRasterMultiple.o spatSources.o spatTime.o spatVector.o spatVector2.o string_utils.o vecmath.o vecmathse.o vector_methods.o write.o write_gdal.o write_ogr.o -lproj -L/usr/lib/x86_64-linux-gnu -lgdal -L/usr/lib/x86_64-linux-gnu -lgeos_c -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpIbn1q9/R.INSTALL2734b124655b82/terra/src'
make[1]: Entering directory '/tmp/RtmpIbn1q9/R.INSTALL2734b124655b82/terra/src'
make[1]: Leaving directory '/tmp/RtmpIbn1q9/R.INSTALL2734b124655b82/terra/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-terra/00new/terra/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘sds’ with signature ‘x="stars"’: no definition for class “stars”
in method for ‘sds’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy”
in method for ‘svc’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"stars","SpatRasterDataset"’: no definition for class “stars”
in method for ‘coerce’ with signature ‘"ggmap","SpatRaster"’: no definition for class “ggmap”
in method for ‘coerce’ with signature ‘"sf","SpatRaster"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"sf","SpatVector"’: no definition for class “sf”
in method for ‘coerce’ with signature ‘"sfc","SpatVector"’: no definition for class “sfc”
in method for ‘coerce’ with signature ‘"sfg","SpatVector"’: no definition for class “sfg”
in method for ‘coerce’ with signature ‘"XY","SpatVector"’: no definition for class “XY”
in method for ‘coerce’ with signature ‘"im","SpatRaster"’: no definition for class “im”
in method for ‘coerce’ with signature ‘"SpatVector","Spatial"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"Spatial","SpatVector"’: no definition for class “Spatial”
in method for ‘coerce’ with signature ‘"SpatialGrid","SpatRaster"’: no definition for class “SpatialGrid”
in method for ‘coerce’ with signature ‘"SpatialPixels","SpatRaster"’: no definition for class “SpatialPixels”
in method for ‘crs’ with signature ‘"sf"’: no definition for class “sf”
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘terra’
in method for ‘distance’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf”
in method for ‘ext’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘ext’ with signature ‘x="bbox"’: no definition for class “bbox”
in method for ‘ext’ with signature ‘x="Extent"’: no definition for class “Extent”
in method for ‘ext’ with signature ‘x="Raster"’: no definition for class “Raster”
in method for ‘ext’ with signature ‘x="Spatial"’: no definition for class “Spatial”
in method for ‘extract’ with signature ‘x="SpatRaster",y="sf"’: no definition for class “sf”
in method for ‘mask’ with signature ‘x="SpatRaster",mask="sf"’: no definition for class “sf”
in method for ‘points’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘lines’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘polys’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘lines’ with signature ‘x="leaflet"’: no definition for class “leaflet”
in method for ‘points’ with signature ‘x="leaflet"’: no definition for class “leaflet”
in method for ‘rast’ with signature ‘x="stars"’: no definition for class “stars”
in method for ‘rast’ with signature ‘x="stars_proxy"’: no definition for class “stars_proxy”
in method for ‘rasterize’ with signature ‘x="sf",y="SpatRaster"’: no definition for class “sf”
in method for ‘show’ with signature ‘"Rcpp_SpatDataFrame"’: no definition for class “Rcpp_SpatDataFrame”
in method for ‘show’ with signature ‘"Rcpp_SpatCategories"’: no definition for class “Rcpp_SpatCategories”
in method for ‘geomtype’ with signature ‘x="Spatial"’: no definition for class “Spatial”
Creating a generic function for ‘identical’ from package ‘base’ in package ‘terra’
in method for ‘vect’ with signature ‘x="Spatial"’: no definition for class “Spatial”
in method for ‘vect’ with signature ‘x="sf"’: no definition for class “sf”
in method for ‘vect’ with signature ‘x="sfc"’: no definition for class “sfc”
in method for ‘vect’ with signature ‘x="XY"’: no definition for class “XY”
Creating a generic function for ‘unserialize’ from package ‘base’ in package ‘terra’
Creating a generic function for ‘readRDS’ from package ‘base’ in package ‘terra’
** help
*** installing help indices
converting help for package ‘terra’
finding HTML links ... done
NAflag html
RGB html
SpatExtent-class html
SpatRaster-class html
SpatVector-class html
activeCat html
add html
adjacent html
aggregate html
align html
all.equal html
animate html
app html
approximate html
arith-generic html
as.character html
as.data.frame html
as.lines html
as.list html
as.points html
as.polygons html
as.raster html
atan2 html
autocor html
barplot html
boundaries html
box html
boxplot html
buffer html
c html
cartogram html
catalyze html
cellSize html
cells html
centroids html
clamp html
clamp_ts html
classify html
click html
coerce html
collapse html
colors html
combineGeoms html
compare-generics html
compareGeom html
concats html
contour html
convhull html
costDist html
cover html
crds html
crop html
crosstab html
crs html
datatype html
deepcopy html
densify html
density html
deprecated html
depth html
describe html
diff html
dimensions html
direction html
disaggregate html
distance html
dots html
draw html
elongate html
erase html
expanse html
ext html
extend html
extract html
extractAlong html
extractRange html
factors html
fill html
fillTime html
flip html
focal html
focal3D html
focalCpp html
finding level-2 HTML links ... done
focalMat html
focalPairs html
focalReg html
focalValues html
forceCCW html
freq html
gaps html
gdal html
geometry html
geomtype html
global html
graticule html
gridDist html
halo html
headtail html
hist html
identical html
ifelse html
image html
impose html
init html
inplace html
inset html
interpIDW html
interpNear html
interpolate html
intersect html
is.bool html
is.empty html
is.lonlat html
is.rotated html
is.valid html
k_means html
lapp html
layerCor html
legend html
linearUnits html
lines html
makeTiles html
makeVRT html
mappal html
mask html
match html
math-generics html
mem html
merge html
mergeTime html
meta html
metags html
minmax html
modal html
mosaic html
na.omit html
names html
nearby html
normalize.longitude html
north html
not.na html
origin html
pairs html
panel html
patches html
perim html
persp html
plet html
plot html
plotRGB html
plot_extent html
plot_graticule html
prcomp html
predict html
princomp html
project html
quantile html
query html
rangeFill html
rapp html
rast html
rasterize html
rasterizeGeom html
rasterizeWin html
rcl html
readwrite html
rectify html
regress html
relate html
rep html
replace_dollar html
replace_layers html
replace_values html
resample html
rescale html
roll html
rotate html
same.crs html
sample html
sapp html
sbar html
scale html
scatter html
scoff html
sds html
segregate html
select html
selectHigh html
selectRange html
serialize html
setValues html
shade html
sharedPaths html
shift html
sieve html
simplify html
sort html
sources html
spin html
split html
sprc html
stretch html
subset html
subset_dollar html
subset_double html
subset_single html
subst html
summarize-generics html
summary html
svc html
symdif html
tapp html
terra-package html
terraOptions html
terrain html
text html
time html
tmpFile html
topology html
transpose html
trim html
union html
unique html
units html
update html
values html
varnames html
vect html
vector_layers html
viewshed html
voronoi html
vrt html
vrt_tiles html
weighted.mean html
where html
which html
width html
window html
wrap html
wrapCache html
writeCDF html
writeRaster html
writeVector html
xapp html
xmin html
xyCellFrom html
zonal html
zoom html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (terra)