Install log for 'targeted'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘targeted’ ...
** package ‘targeted’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpie2MRw/R.INSTALL18b26b371efb8b/targeted/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cumres.cpp -o cumres.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c glm.cpp -o glm.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kalman.cpp -o kalman.o
kalman.cpp: In member function ‘void target::LinearGaussian::filter()’:
kalman.cpp:60:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   60 |      for (int i = 0; i < n; i++) { // Kalman filter
      |                      ~~^~~
kalman.cpp:72:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   72 |         if (i < n-1){ // avoid calculating predictive distribution mean (E[alpha_{n+1}|y_{1:n}]) and variance because no matching y_{n+1} exists in the time series
      |             ~~^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mlogit.cpp -o mlogit.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nb.cpp -o nb.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nb_interface.cpp -o nb_interface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nondom.cpp -o nondom.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ode_interface.cpp -o ode_interface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c odesolver.cpp -o odesolver.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pava.cpp -o pava.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c riskreg_interface.cpp -o riskreg_interface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c target.cpp -o target.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_R -I. -I../../../include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils_interface.cpp -o utils_interface.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o targeted.so RcppExports.o cumres.o glm.o kalman.o mlogit.o nb.o nb_interface.o nondom.o ode_interface.o odesolver.o pava.o riskreg_interface.o target.o utils.o utils_interface.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpie2MRw/R.INSTALL18b26b371efb8b/targeted/src'
make[1]: Entering directory '/tmp/Rtmpie2MRw/R.INSTALL18b26b371efb8b/targeted/src'
make[1]: Leaving directory '/tmp/Rtmpie2MRw/R.INSTALL18b26b371efb8b/targeted/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-targeted/00new/targeted/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘targeted’
    finding HTML links ... done
    ML                                      html  
    NB-class                                html  
    NB                                      html  
    RATE                                    html  
    RATE.surv                               html  
    SL                                      html  
    Scoring                                 html  
    aipw                                    html  
    alean                                   html  
    ate                                     html  
    calibration-class                       html  
    calibration                             html  
    cate                                    html  
    cate_link                               html  
    cross_validated-class                   html  
    crr                                     html  
    cv                                      html  
    design                                  html  
    expand.list                             html  
    ml_model                                html  
    nondom                                  html  
    pava                                    html  
    predict.NB                              html  
    predict.density                         html  
    riskreg                                 html  
    riskreg_cens                            html  
    softmax                                 html  
    solve_ode                               html  
    specify_ode                             html  
    targeted-class                          html  
    targeted-package                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (targeted)