* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘surveillance’ ...
** package ‘surveillance’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpfmdDzS/R.INSTALLaee29953acc2/surveillance/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c backproj.cc -o backproj.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c determineSources.cc -o determineSources.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ks.c -o ks.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stcd-assuncaocorrea.cc -o stcd-assuncaocorrea.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surveillance.c -o surveillance.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twins.cc -o twins.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/polyCub/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c twinstim_siaf_polyCub_iso.c -o twinstim_siaf_polyCub_iso.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o surveillance.so backproj.o determineSources.o init.o ks.o stcd-assuncaocorrea.o surveillance.o twins.o twinstim_siaf_polyCub_iso.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpfmdDzS/R.INSTALLaee29953acc2/surveillance/src'
make[1]: Entering directory '/tmp/RtmpfmdDzS/R.INSTALLaee29953acc2/surveillance/src'
make[1]: Leaving directory '/tmp/RtmpfmdDzS/R.INSTALLaee29953acc2/surveillance/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-surveillance/00new/surveillance/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘surveillance’
finding HTML links ... done
LRCUSUM.runlength html
MMRcoverageDE html
R0 html
abattoir html
addFormattedXAxis html
addSeason2formula html
aggregate.disProg html
algo.bayes html
algo.call html
algo.cdc html
algo.compare html
algo.cusum html
algo.farrington html
algo.farrington.assign.weights html
algo.farrington.fitGLM html
algo.farrington.threshold html
algo.glrnb html
algo.hmm html
algo.outbreakP html
algo.quality html
algo.rki html
algo.rogerson html
algo.summary html
algo.twins html
all.equal html
animate html
anscombe.residuals html
arlCusum html
backprojNP html
bestCombination html
boda html
bodaDelay html
calibration html
campyDE html
categoricalCUSUM html
checkResidualProcess html
clapply html
coeflist html
create.disProg html
deleval html
disProg2sts html
discpoly html
earsC html
epidata html
epidataCS html
finding level-2 HTML links ... done
epidataCS_aggregate html
epidataCS_animate html
epidataCS_permute html
epidataCS_plot html
epidataCS_update html
epidata_animate html
epidata_intersperse html
epidata_plot html
epidata_summary html
estimateGLRNbHook html
fanplot html
farringtonFlexible html
find.kh html
findH html
findK html
fluBYBW html
formatDate html
formatPval html
glm_epidataCS html
ha html
hagelloch html
hcl.colors html
hepatitisA html
hhh4 html
hhh4_W html
hhh4_W_utils html
hhh4_formula html
hhh4_internals html
hhh4_methods html
hhh4_plot html
hhh4_predict html
hhh4_simulate html
hhh4_simulate_plot html
hhh4_simulate_scores html
hhh4_update html
hhh4_validation html
husO104Hosp html
imdepi html
imdepifit html
influMen html
intensityplot html
intersectPolyCircle html
isScalar html
isoWeekYear html
knox html
ks.plot.unif html
layout.labels html
linelist2sts html
m1 html
magic.dim html
makeControl html
marks html
measles.weser html
measlesDE html
meningo.age html
momo html
multiplicity html
multiplicity.Spatial html
nbOrder html
nowcast html
pairedbinCUSUM html
permutationTest html
pit html
plapply html
plot.atwins html
plot.disProg html
plot.survRes html
poly2adjmat html
polyAtBorder html
primeFactors html
print.algoQV html
ranef html
refvalIdxByDate html
residualsCT html
rotaBB html
runifdisc html
salmAllOnset html
salmHospitalized html
salmNewport html
salmonella.agona html
scores html
shadar html
sim.pointSource html
sim.seasonalNoise html
stK html
stcd html
sts-class html
stsAggregate html
stsBP-class html
stsNC-class html
stsNClist_animate html
stsNewport html
stsSlots html
stsXtrct html
sts_animate html
sts_creation html
sts_ggplot html
sts_observation html
sts_tidy html
stsplot html
stsplot_space html
stsplot_spacetime html
stsplot_time html
surveillance-defunct html
surveillance-package html
surveillance.options html
toLatex.sts html
twinSIR html
twinSIR_cox html
twinSIR_exData html
twinSIR_intensityplot html
twinSIR_methods html
twinSIR_profile html
twinSIR_simulation html
twinstim html
twinstim_epitest html
twinstim_iaf html
twinstim_iafplot html
twinstim_intensity html
twinstim_methods html
twinstim_plot html
twinstim_profile html
twinstim_siaf html
twinstim_siaf_simulatePC html
twinstim_simEndemicEvents html
twinstim_simulation html
twinstim_step html
twinstim_tiaf html
twinstim_update html
unionSpatialPolygons html
untie html
wrap.algo html
zetaweights html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (surveillance)