* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘strollur’ ... ** this is package ‘strollur’ version ‘0.1.3’ ** package ‘strollur’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBQQprA/R.INSTALL53903475f1e05/strollur/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c abundtable.cpp -o abundtable.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bintable.cpp -o bintable.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dataset.cpp -o dataset.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phylotree.cpp -o phylotree.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_dataset.cpp -o rcpp_dataset.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_xint_xdev_functions.cpp -o rcpp_xint_xdev_functions.o rcpp_xint_xdev_functions.cpp: In function ‘Rcpp::Environment xdev_set_abundances(const Rcpp::Environment&, const std::vector >&, const std::vector >&, const std::string&)’: rcpp_xint_xdev_functions.cpp:1148:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1148 | if (abundances[i].size() != numSamples) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c report.cpp -o report.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c seqreport.cpp -o seqreport.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cli/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o strollur.so RcppExports.o abundtable.o bintable.o dataset.o phylotree.o rcpp_dataset.o rcpp_xint_xdev_functions.o report.o seqreport.o utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBQQprA/R.INSTALL53903475f1e05/strollur/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBQQprA/R.INSTALL53903475f1e05/strollur/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBQQprA/R.INSTALL53903475f1e05/strollur/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-strollur/00new/strollur/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘strollur’ finding HTML links ... done abundance html add html assign html clear html copy_dataset html count html export_dataset html get_bin_types html has_sample html has_sequence_strings html import_dataset html is_aligned html is_equal html load_dataset html miseq_sop_example html names html new_dataset html new_reference html read_dada2 html read_fasta html read_mothur html read_mothur_cons_taxonomy html read_mothur_count html read_mothur_list html read_mothur_oligos html read_mothur_rabund html read_mothur_shared html read_mothur_taxonomy html read_phyloseq html read_qiime2 html read_qiime2_feature_table html read_qiime2_metadata html read_qiime2_taxonomy html remove_file html report html save_dataset html sort_dataframe html strollur-package html strollur html strollur_example html summary html unpack_qiime2_artifact html write_fasta html write_mothur html write_mothur_cons_taxonomy html write_mothur_count html write_mothur_design html write_mothur_list html write_mothur_rabund html write_mothur_shared html write_phyloseq html write_taxonomy html xdev_abundance html xdev_add_references html xdev_add_report html xdev_add_sequences html xdev_assign_bin_representative_sequences html xdev_assign_bin_taxonomy html xdev_assign_bins html xdev_assign_sequence_abundance html xdev_assign_sequence_taxonomy html xdev_assign_sequence_taxonomy_tidy html xdev_assign_treatments html xdev_count html xdev_get_abundances_by_sample html xdev_get_by_sample html xdev_get_list_vector html xdev_get_sequences html xdev_has_sequence_taxonomy html xdev_merge_bins html xdev_merge_sequences html xdev_names html xdev_remove_bins html xdev_remove_lineages html xdev_remove_samples html xdev_remove_sequences html xdev_report html xdev_set_abundance html xdev_set_abundances html xdev_set_dataset_name html xdev_set_sequences html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (strollur)