* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘stringfish’ ...
** this is package ‘stringfish’ version ‘0.19.0’
** package ‘stringfish’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
stringfish configure script
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-15 -std=gnu++20 accepts -g... yes
checking for g++-15 -std=gnu++20 option to enable C++11 features... -std=gnu++11
C++ compiler: g++-15 -std=gnu++20
R 4.6.0 detected -- using R default C++ standard
PCRE2 10.46 library detected -- skipping PCRE2 compilation
-lpcre2-8
configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++17
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfgVYuH/R.INSTALL77a9125fe21/stringfish/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sf_functions.cpp -o sf_functions.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/concurrent_unordered_set.h:23,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/TBB.h:11,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:24,
from sf_functions.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/../atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here
251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
| ~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/../atomic.h:551:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic<long unsigned int>&’ does not use ‘constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)’ [-Wcast-user-defined]
551 | return (atomic<T>&)t;
| ^~~~~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o
ar rcs libSFPCRE2.a PCRE2_wrapper/pcre2_wrapper.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2 -lpcre2-8 -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfgVYuH/R.INSTALL77a9125fe21/stringfish/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfgVYuH/R.INSTALL77a9125fe21/stringfish/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfgVYuH/R.INSTALL77a9125fe21/stringfish/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-stringfish/00new/stringfish/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘stringfish’
finding HTML links ... done
convert_to_sf_vector html
convert_to_slice_store html
get_string_type html
materialize html
random_strings html
sf_assign html
sf_collapse html
sf_compare html
sf_concat html
sf_ends html
sf_grepl html
sf_gsub html
sf_iconv html
sf_match html
sf_nchar html
sf_paste html
sf_readLines html
sf_split html
sf_starts html
sf_substr html
sf_tolower html
sf_toupper html
sf_trim html
sf_vector html
sf_vector_create html
sf_writeLines html
slice_store_create html
slice_store_create_with_size html
string_identical html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringfish)