- using R version 4.2.3 Patched (2023-03-15 r84011)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘stars/DESCRIPTION’ ... OK
- this is package ‘stars’ version ‘0.6-0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘starsdata’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘stars’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [44s/51s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [32s/37s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
read_ncdf 5.855 0.094 6.641
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [131s/156s] OK
Running ‘aggregate.R’ [5s/6s]
Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ...4c4
< Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE
---
> Linking to GEOS 3.9.3, GDAL 3.5.2, PROJ 8.2.1; sf_use_s2() is TRUE
Running ‘align.R’ [3s/4s]
Comparing ‘align.Rout’ to ‘align.Rout.save’ ... OK
Running ‘area.R’ [2s/3s]
Comparing ‘area.Rout’ to ‘area.Rout.save’ ...51a52,64
> /PRODUCT/longitude,
> /PRODUCT/latitude,
> /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column,
> stars object with 2 dimensions and 1 attribute
> attribute(s):
> Min. 1st Qu. Median Mean 3rd Qu. Max.
> area [m^2] 64503163 64957713 65834712 65849060 66734597 67218777
> dimension(s):
> from to refsys values x/y
> x 1 5 WGS 84 [5x5] -5.81066 [°],...,-5.26234 [°] [x]
> y 1 5 WGS 84 [5x5] 44.4439 [°],...,44.8693 [°] [y]
> curvilinear grid
> There were 15 warnings (use warnings() to see them)
Running ‘crop.R’ [4s/5s]
Comparing ‘crop.Rout’ to ‘crop.Rout.save’ ... OK
Running ‘curvilinear.R’ [2s/3s]
Comparing ‘curvilinear.Rout’ to ‘curvilinear.Rout.save’ ...54a55,70
> /PRODUCT/longitude,
> /PRODUCT/latitude,
> /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column,
> stars object with 3 dimensions and 1 attribute
> attribute(s):
> Min. 1st Qu. Median
> nitrogendioxide_summed_total_c... 3.650813e-05 7.451281e-05 8.296968e-05
> Mean 3rd Qu. Max. NA's
> nitrogendioxide_summed_total_c... 8.581399e-05 9.397442e-05 0.0004535302 330
> dimension(s):
> from to refsys values x/y
> x 1 450 WGS 84 [450x278] -5.81066 [°],...,30.9468 [°] [x]
> y 1 278 WGS 84 [450x278] 28.3605 [°],...,51.4686 [°] [y]
> time 1 1 NA NULL
> curvilinear grid
> There were 15 warnings (use warnings() to see them)
Running ‘datasets.R’ [2s/3s]
Comparing ‘datasets.Rout’ to ‘datasets.Rout.save’ ...29a30,38
> stars_proxy object with 1 attribute in 1 file(s):
> $`MTD_MSIL1C.xml:10m:EPSG_32632`
> [1] "[...]/MTD_MSIL1C.xml:10m:EPSG_32632"
>
> dimension(s):
> from to offset delta refsys values x/y
> x 1 10980 3e+05 10 WGS 84 / UTM zone 32N NULL [x]
> y 1 10980 6e+06 -10 WGS 84 / UTM zone 32N NULL [y]
> band 1 4 NA NA NA B4,...,B8
Running ‘dimensions.R’ [4s/4s]
Comparing ‘dimensions.Rout’ to ‘dimensions.Rout.save’ ... OK
Running ‘ee.R’ [2s/3s]
Comparing ‘ee.Rout’ to ‘ee.Rout.save’ ...6c6
< Linking to GEOS 3.11.1, GDAL 3.6.2, PROJ 9.1.1; sf_use_s2() is TRUE
---
> Linking to GEOS 3.9.3, GDAL 3.5.2, PROJ 8.2.1; sf_use_s2() is TRUE
Running ‘extract.R’ [2s/3s]
Comparing ‘extract.Rout’ to ‘extract.Rout.save’ ... OK
Running ‘gridtypes.R’ [2s/3s]
Comparing ‘gridtypes.Rout’ to ‘gridtypes.Rout.save’ ... OK
Running ‘nc.R’ [3s/3s]
Comparing ‘nc.Rout’ to ‘nc.Rout.save’ ... OK
Running ‘plot.R’ [4s/5s]
Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
Running ‘predict.R’ [6s/7s]
Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ... OK
Running ‘proxy.R’ [4s/5s]
Comparing ‘proxy.Rout’ to ‘proxy.Rout.save’ ... OK
Running ‘raster.R’ [14s/16s]
Comparing ‘raster.Rout’ to ‘raster.Rout.save’ ...24c24
< terra 1.7.18
---
> terra 1.6.41
Running ‘rasterize.R’ [4s/5s]
Comparing ‘rasterize.Rout’ to ‘rasterize.Rout.save’ ... OK
Running ‘rectilinear.R’ [3s/4s]
Comparing ‘rectilinear.Rout’ to ‘rectilinear.Rout.save’ ... OK
Running ‘redimension.R’ [3s/3s]
Comparing ‘redimension.Rout’ to ‘redimension.Rout.save’ ... OK
Running ‘sf.R’ [3s/4s]
Comparing ‘sf.Rout’ to ‘sf.Rout.save’ ... OK
Running ‘sp.R’ [3s/4s]
Comparing ‘sp.Rout’ to ‘sp.Rout.save’ ... OK
Running ‘spacetime.R’ [4s/5s]
Comparing ‘spacetime.Rout’ to ‘spacetime.Rout.save’ ...223,226c223,226
< 2010-08-05 10:00:00 9.38 ID 1 1
< 2010-08-05 11:00:00 11.50 ID 4 2
< 2010-08-05 12:00:00 10.40 ID 7 3
< 2010-08-05 13:00:00 10.30 ID 10 4
---
> 2010-08-05 10:00:00 " 9.38" "ID 1" "1"
> 2010-08-05 11:00:00 "11.50" "ID 4" "2"
> 2010-08-05 12:00:00 "10.40" "ID 7" "3"
> 2010-08-05 13:00:00 "10.30" "ID 10" "4"
243,246c243,246
< 2010-08-05 10:00:00 ID 1 ID 2 ID 3
< 2010-08-05 11:00:00 ID 4 ID 5 ID 6
< 2010-08-05 12:00:00 ID 7 ID 8 ID 9
< 2010-08-05 13:00:00 ID 10 ID 11 ID 12
---
> 2010-08-05 10:00:00 "ID 1" "ID 2" "ID 3"
> 2010-08-05 11:00:00 "ID 4" "ID 5" "ID 6"
> 2010-08-05 12:00:00 "ID 7" "ID 8" "ID 9"
> 2010-08-05 13:00:00 "ID 10" "ID 11" "ID 12"
316,332d315
<
< ################################### WARNING ###################################
< # We noticed you have dplyr installed. The dplyr lag() function breaks how #
< # base R's lag() function is supposed to work, which breaks lag(my_xts). #
< # #
< # If you call library(dplyr) later in this session, then calls to lag(my_xts) #
< # that you enter or source() into this session won't work correctly. #
< # #
< # All package code is unaffected because it is protected by the R namespace #
< # mechanism. #
< # #
< # Set `options(xts.warn_dplyr_breaks_lag = FALSE)` to suppress this warning. #
< # #
< # You can use stats::lag() to make sure you're not using dplyr::lag(), or you #
< # can add conflictRules('dplyr', exclude = 'lag') to your .Rprofile to stop #
< # dplyr from breaking base R's lag() function. #
< ################################### WARNING ###################################
Running ‘spatstat.R’ [5s/6s]
Comparing ‘spatstat.Rout’ to ‘spatstat.Rout.save’ ...14c14
< spatstat.geom 3.1-0
---
> spatstat.geom 3.0-3
Running ‘stars.R’ [11s/13s]
Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ...212c212
< 4 1841004 1143985
---
> 4 1841005 1143985
216c216
< 8 1841010 1143965
---
> 8 1841011 1143965
Running ‘subset.R’ [3s/3s]
Comparing ‘subset.Rout’ to ‘subset.Rout.save’ ... OK
Running ‘testthat.R’ [17s/21s]
Comparing ‘testthat.Rout’ to ‘testthat.Rout.save’ ... OK
Running ‘tidy.R’ [3s/4s]
Comparing ‘tidy.Rout’ to ‘tidy.Rout.save’ ... OK
Running ‘transform.R’ [3s/4s]
Comparing ‘transform.Rout’ to ‘transform.Rout.save’ ...4a5,9
> Warning messages:
> 1: In fun(libname, pkgname) :
> GEOS versions differ: lwgeom has 3.9.1 sf has 3.9.3
> 2: In fun(libname, pkgname) :
> PROJ versions differ: lwgeom has 7.2.1 sf has 8.2.1
Running ‘warp.R’ [2s/3s]
Comparing ‘warp.Rout’ to ‘warp.Rout.save’ ... OK
Running ‘write.R’ [3s/3s]
Comparing ‘write.Rout’ to ‘write.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [67s/84s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE