* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘specmine’ ...
** this is package ‘specmine’ version ‘4.0.0’
** package ‘specmine’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘specmine’
finding HTML links ... done
aggregate_samples html
airPLS_fast_dataset html
aov_all_vars html
aov_one_var html
apply_by_group html
apply_by_groups html
baseline_correction html
convert_chebi_to_kegg html
convert_from_chemospec html
convert_hmdb_to_kegg html
convert_keggpathway_2_reactiongraph html
convert_multiple_spcmnm_to_kegg html
count_missing_values html
count_missing_values_per_sample html
count_missing_values_per_variable html
create_dataset html
create_pathway_with_reactions html
dataset_from_peaks html
feature_selection html
filter_feature_selection html
flat_pattern_filter html
get_MetabolitePath html
get_OrganismsCodes html
get_cpd_names html
get_files_list_per_assay html
get_metabPaths_org html
get_metabolights_study html
get_metabolights_study_files_assay html
get_metabolights_study_metadata_assay html
get_metabolights_study_samples_files html
get_paths_with_cpds_org html
get_peak_values html
get_samples_names_dx html
get_x_label html
get_x_values_as_text html
ica_analysis_dataset html
ica_kmeans_plot2D html
ica_kmeans_plot3D html
ica_loadingsplot html
ica_pairs_kmeans_plot html
ica_pairs_plot html
ica_scoresplot2D html
ica_scoresplot3D html
impute_nas_knn html
impute_nas_mean html
impute_nas_median html
impute_nas_value html
merge_data_metadata html
metabolights_studies_list html
missingvalues_imputation html
multiClassSummary html
pathway_analysis html
pca_analysis_dataset html
pca_biplot html
pca_biplot3D html
pca_importance html
pca_kmeans_plot2D html
pca_kmeans_plot3D html
pca_pairs_kmeans_plot html
pca_pairs_plot html
pca_plot_3d html
pca_robust html
pca_scoresplot2D html
pca_scoresplot3D html
pca_scoresplot3D_rgl html
pca_screeplot html
peak_detection2d html
raman_align_peaks html
raman_crop_spectra html
raman_despike html
raman_find_peaks html
raman_normalize html
raman_normalize_peak_features html
raman_sgolay_derivative html
raman_transform_fourier html
raman_transform_wavelet html
read-spc html
read_csvs_folder html
read_data_csv html
read_data_dx html
read_dataset_csv html
read_dataset_dx html
read_metadata html
read_ms_spectra html
read_multiple_csvs html
recursive_feature_elimination html
remove_data html
remove_data_variables html
remove_metadata_variables html
remove_samples html
remove_samples_by_na_metadata html
remove_samples_by_nas html
remove_variables_by_nas html
remove_x_values_by_interval html
specmine-package html
spectra_options html
subset_by_samples_and_xvalues html
subset_metadata html
subset_random_samples html
subset_samples html
subset_samples_by_metadata_values html
subset_x_values html
subset_x_values_by_interval html
summary_var_importance html
train_and_predict html
train_classifier html
train_models_performance html
tsne_analysis_dataset html
tsne_kmeans_plot2D html
tsne_kmeans_plot3D html
tsne_pairs_kmeans_plot html
tsne_pairs_plot html
tsne_scoresplot2D html
tsne_scoresplot3D html
umap_analysis_dataset html
umap_kmeans_plot2D html
umap_kmeans_plot3D html
umap_pairs_kmeans_plot html
umap_pairs_plot html
umap_scoresplot2D html
umap_scoresplot3D html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (specmine)