* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spacc’ ...
** this is package ‘spacc’ version ‘0.8.3’
** package ‘spacc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZFrsEM/R.INSTALL279e91d97d54c/spacc/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c beta.cpp -o beta.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c coverage.cpp -o coverage.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distance.cpp -o distance.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c hill.cpp -o hill.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c hill_coverage.cpp -o hill_coverage.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kncn.cpp -o kncn.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c knn.cpp -o knn.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods.cpp -o methods.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c metrics.cpp -o metrics.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c orders.cpp -o orders.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c phylo.cpp -o phylo.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c random.cpp -o random.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spacc.so RcppExports.o beta.o coverage.o distance.o hill.o hill_coverage.o kncn.o knn.o methods.o metrics.o orders.o phylo.o random.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZFrsEM/R.INSTALL279e91d97d54c/spacc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZFrsEM/R.INSTALL279e91d97d54c/spacc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZFrsEM/R.INSTALL279e91d97d54c/spacc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spacc/00new/spacc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘spacc’
    finding HTML links ... done
    ace                                     html  
    alphaDiversity                          html  
    analytical                              html  
    as_sf                                   html  
    autoplot.spacc                          html  
    betaDecay                               html  
    bootstrap_richness                      html  
    c.spacc                                 html  
    c.spacc_beta                            html  
    c.spacc_coverage                        html  
    c.spacc_hill                            html  
    chao1                                   html  
    chao2                                   html  
    coleman                                 html  
    collector                               html  
    compare                                 html  
    compareModels                           html  
    completenessProfile                     html  
    dar                                     html  
    distanceDecay                           html  
    distances                               html  
    diversityPartition                      html  
    diversityProfile                        html  
    diversityProfileFunc                    html  
    diversityProfilePhylo                   html  
    evenness                                html  
    extrapolate                             html  
    extrapolateCoverage                     html  
    gammaDiversity                          html  
    iChao1                                  html  
    iChao2                                  html  
    interpolateCoverage                     html  
    jackknife                               html  
    mao_tau                                 html  
    plot.spacc                              html  
    plot.spacc_metrics                      html  
    predict.spacc                           html  
    rarefy                                  html  
    ses                                     html  
    sesars                                  html  
    sfar                                    html  
    spacc-package                           html  
    spacc                                   html  
    spaccBeta                               html  
    spaccBetaFunc                           html  
    spaccBetaPhylo                          html  
    spaccCoverage                           html  
    spaccDiversity                          html  
    spaccEndemism                           html  
    spaccFunc                               html  
    spaccHill                               html  
    spaccHillBeta                           html  
    spaccHillCoverage                       html  
    spaccMetrics                            html  
    spaccPhylo                              html  
    spatialEigenvectors                     html  
    spatialPartition                        html  
    spatialRarefaction                      html  
    subsample                               html  
    wavefront                               html  
    zetaDiversity                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spacc)