* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spacc’ ...
** this is package ‘spacc’ version ‘0.8.3’
** package ‘spacc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoLzewR/R.INSTALL24505ecfd94ea/spacc/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c beta.cpp -o beta.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c coverage.cpp -o coverage.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c hill.cpp -o hill.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c hill_coverage.cpp -o hill_coverage.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c kncn.cpp -o kncn.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c knn.cpp -o knn.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c methods.cpp -o methods.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c metrics.cpp -o metrics.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c orders.cpp -o orders.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c phylo.cpp -o phylo.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spacc.so RcppExports.o beta.o coverage.o distance.o hill.o hill_coverage.o kncn.o knn.o methods.o metrics.o orders.o phylo.o random.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoLzewR/R.INSTALL24505ecfd94ea/spacc/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoLzewR/R.INSTALL24505ecfd94ea/spacc/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoLzewR/R.INSTALL24505ecfd94ea/spacc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spacc/00new/spacc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spacc’
finding HTML links ... done
ace html
alphaDiversity html
analytical html
as_sf html
autoplot.spacc html
betaDecay html
bootstrap_richness html
c.spacc html
c.spacc_beta html
c.spacc_coverage html
c.spacc_hill html
chao1 html
chao2 html
coleman html
collector html
compare html
compareModels html
completenessProfile html
dar html
distanceDecay html
distances html
diversityPartition html
diversityProfile html
diversityProfileFunc html
diversityProfilePhylo html
evenness html
extrapolate html
extrapolateCoverage html
gammaDiversity html
iChao1 html
iChao2 html
interpolateCoverage html
jackknife html
mao_tau html
plot.spacc html
plot.spacc_metrics html
predict.spacc html
rarefy html
ses html
sesars html
sfar html
spacc-package html
spacc html
spaccBeta html
spaccBetaFunc html
spaccBetaPhylo html
spaccCoverage html
spaccDiversity html
spaccEndemism html
spaccFunc html
spaccHill html
spaccHillBeta html
spaccHillCoverage html
spaccMetrics html
spaccPhylo html
spatialEigenvectors html
spatialPartition html
spatialRarefaction html
subsample html
wavefront html
zetaDiversity html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spacc)