* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spMC’ ...
** package ‘spMC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp46eXyB/R.INSTALL1cbaf6a58d0a/spMC/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spMC.c -o spMC.o
In file included from /usr/include/string.h:535,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R_ext/RS.h:34,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R.h:78,
from spMC.h:12,
from spMC.c:2:
In function ‘memcpy’,
inlined from ‘expmat’ at spMC.c:870:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘x2’ may be used uninitialized [-Wmaybe-uninitialized]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
<built-in>: In function ‘expmat’:
<built-in>: note: by argument 2 of type ‘const void *’ to ‘__builtin___memcpy_chk’ declared here
In function ‘memcpy’,
inlined from ‘expmat’ at spMC.c:870:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘x2’ may be used uninitialized [-Wmaybe-uninitialized]
<built-in>: In function ‘expmat’:
<built-in>: note: by argument 2 of type ‘const void *’ to ‘__builtin___memcpy_chk’ declared here
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spMC.so spMC.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp46eXyB/R.INSTALL1cbaf6a58d0a/spMC/src'
make[1]: Entering directory '/tmp/Rtmp46eXyB/R.INSTALL1cbaf6a58d0a/spMC/src'
make[1]: Leaving directory '/tmp/Rtmp46eXyB/R.INSTALL1cbaf6a58d0a/spMC/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spMC/00new/spMC/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spMC’
finding HTML links ... done
ACM html
boxplot.lengths html
contour.pemt html
density.lengths html
embed_MC html
getlen html
hist.lengths html
image.multi_tpfit html
image.pemt html
is.lengths html
is.multi_tpfit html
is.multi_transiogram html
is.pemt html
is.tpfit html
is.transiogram html
mixplot html
mlen html
multi_tpfit html
multi_tpfit_ils html
multi_tpfit_me html
multi_tpfit_ml html
pemt html
persp.multi_tpfit html
persp.pemt html
plot.density.lengths html
plot.hist.lengths html
plot.lengths html
plot.transiogram html
predict.multi_tpfit html
predict.tpfit html
print.density.lengths html
print.lengths html
print.multi_tpfit html
print.multi_transiogram html
print.summary.lengths html
print.tpfit html
print.transiogram html
quench html
setCores html
sim html
sim_ck html
sim_ik html
sim_mcs html
sim_path html
spMC-package html
summary.lengths html
tpfit html
tpfit_ils html
tpfit_me html
tpfit_ml html
transiogram html
which_lines html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spMC)