* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spAbundance’ ...
** package ‘spAbundance’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp29JcZe/R.INSTALL3a0643406b8ddf/spAbundance/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c DS.cpp -o DS.o
DS.cpp: In function ‘SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
DS.cpp:773:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:203:10: note: ‘sigmaSqPSamples_r’ was declared here
203 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:775:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
775 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: ‘alphaStarSamples_r’ was declared here
204 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:767:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
767 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:212:10: note: ‘sigmaSqMuSamples_r’ was declared here
212 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:769:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
769 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: ‘betaStarSamples_r’ was declared here
213 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:867:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
867 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:235:12: note: ‘tmp_0’ was declared here
235 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix.cpp -o NMix.o
NMix.cpp: In function ‘SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
NMix.cpp:615:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
615 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:200:10: note: ‘sigmaSqPSamples_r’ was declared here
200 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:617:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
617 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: ‘alphaStarSamples_r’ was declared here
201 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:609:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
609 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:209:10: note: ‘sigmaSqMuSamples_r’ was declared here
209 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:611:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
611 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: ‘betaStarSamples_r’ was declared here
210 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:707:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
707 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:221:12: note: ‘tmp_0’ was declared here
221 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abund.cpp -o abund.o
abund.cpp: In function ‘SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
abund.cpp:410:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
410 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:168:10: note: ‘sigmaSqMuSamples_r’ was declared here
168 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:412:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
412 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: ‘betaStarSamples_r’ was declared here
169 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abundGaussian.cpp -o abundGaussian.o
abundGaussian.cpp: In function ‘SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
abundGaussian.cpp:370:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
370 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:163:10: note: ‘sigmaSqMuSamples_r’ was declared here
163 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:372:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
372 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: ‘betaStarSamples_r’ was declared here
164 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkAlphaDS.cpp -o checkAlphaDS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c idist.cpp -o idist.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbund.cpp -o lfMsAbund.o
lfMsAbund.cpp: In function ‘SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsAbund.cpp:720:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
720 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:219:10: note: ‘sigmaSqMuSamples_r’ was declared here
219 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:721:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: ‘betaStarSamples_r’ was declared here
220 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:806:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
806 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:228:10: note: ‘kappaSamples_r’ was declared here
228 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
lfMsAbundGaussian.cpp: In function ‘SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsAbundGaussian.cpp:679:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
679 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:243:10: note: ‘sigmaSqMuSamples_r’ was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:680:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: ‘betaStarSamples_r’ was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsDS.cpp -o lfMsDS.o
lfMsDS.cpp: In function ‘SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsDS.cpp:1152:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1152 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:277:10: note: ‘sigmaSqPSamples_r’ was declared here
277 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1153:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: ‘alphaStarSamples_r’ was declared here
278 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1156:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1156 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:286:10: note: ‘sigmaSqMuSamples_r’ was declared here
286 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: ‘betaStarSamples_r’ was declared here
287 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1259:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1259 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:294:10: note: ‘kappaSamples_r’ was declared here
294 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1255:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1255 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:185:12: note: ‘tmp_0’ was declared here
185 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsNMix.cpp -o lfMsNMix.o
lfMsNMix.cpp: In function ‘SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsNMix.cpp:1013:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1013 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:270:10: note: ‘sigmaSqPSamples_r’ was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1014:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: ‘alphaStarSamples_r’ was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1017:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1017 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:279:10: note: ‘sigmaSqMuSamples_r’ was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: ‘betaStarSamples_r’ was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1115:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1115 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:287:10: note: ‘kappaSamples_r’ was declared here
287 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1111:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1111 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:178:12: note: ‘tmp_0’ was declared here
178 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mkSpCov.cpp -o mkSpCov.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbund.cpp -o msAbund.o
msAbund.cpp: In function ‘SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msAbund.cpp:526:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
526 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:199:10: note: ‘sigmaSqMuSamples_r’ was declared here
199 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:527:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: ‘betaStarSamples_r’ was declared here
200 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:610:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
610 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:208:10: note: ‘kappaSamples_r’ was declared here
208 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbundGaussian.cpp -o msAbundGaussian.o
msAbundGaussian.cpp: In function ‘SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msAbundGaussian.cpp:499:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
499 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:217:10: note: ‘sigmaSqMuSamples_r’ was declared here
217 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:500:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: ‘betaStarSamples_r’ was declared here
218 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msDS.cpp -o msDS.o
msDS.cpp: In function ‘SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msDS.cpp:966:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
966 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:258:10: note: ‘sigmaSqPSamples_r’ was declared here
258 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:967:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: ‘alphaStarSamples_r’ was declared here
259 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:970:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
970 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:267:10: note: ‘sigmaSqMuSamples_r’ was declared here
267 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: ‘betaStarSamples_r’ was declared here
268 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1071:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1071 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:275:10: note: ‘kappaSamples_r’ was declared here
275 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1067:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1067 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:179:12: note: ‘tmp_0’ was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msNMix.cpp -o msNMix.o
msNMix.cpp: In function ‘SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msNMix.cpp:829:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
829 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:250:10: note: ‘sigmaSqPSamples_r’ was declared here
250 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:830:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
830 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:251:10: note: ‘alphaStarSamples_r’ was declared here
251 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:833:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
833 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:259:10: note: ‘sigmaSqMuSamples_r’ was declared here
259 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:834:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
834 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:260:10: note: ‘betaStarSamples_r’ was declared here
260 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:929:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
929 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:267:10: note: ‘kappaSamples_r’ was declared here
267 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:925:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
925 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:171:12: note: ‘tmp_0’ was declared here
171 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nn.cpp -o nn.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rpg.cpp -o rpg.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
sfMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsAbundGaussianNNGP.cpp:942:53: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:300:10: note: ‘yRepSamples_r’ was declared here
300 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:941:51: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
941 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: ‘muSamples_r’ was declared here
301 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:943:53: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: ‘likeSamples_r’ was declared here
302 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:948:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
948 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:319:10: note: ‘sigmaSqMuSamples_r’ was declared here
319 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: ‘betaStarSamples_r’ was declared here
320 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
sfMsAbundNNGP.cpp: In function ‘SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsAbundNNGP.cpp:995:58: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
995 | F77_NAME(dcopy)(&nObsnSp, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:268:10: note: ‘yRepSamples_r’ was declared here
268 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:996:56: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
996 | F77_NAME(dcopy)(&nObsnSp, mu, &inc, &REAL(muSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: ‘muSamples_r’ was declared here
269 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:997:58: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
997 | F77_NAME(dcopy)(&nObsnSp, like, &inc, &REAL(likeSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: ‘likeSamples_r’ was declared here
270 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1004:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1004 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:287:10: note: ‘sigmaSqMuSamples_r’ was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1005:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1005 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: ‘betaStarSamples_r’ was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1097:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1097 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:296:10: note: ‘kappaSamples_r’ was declared here
296 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
sfMsDSNNGP.cpp: In function ‘SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsDSNNGP.cpp:1428:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1428 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:341:10: note: ‘sigmaSqPSamples_r’ was declared here
341 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1429:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: ‘alphaStarSamples_r’ was declared here
342 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1432:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1432 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:350:10: note: ‘sigmaSqMuSamples_r’ was declared here
350 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: ‘betaStarSamples_r’ was declared here
351 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1542:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1542 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:358:10: note: ‘kappaSamples_r’ was declared here
358 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1538:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1538 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:243:12: note: ‘tmp_0’ was declared here
243 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
sfMsNMixNNGP.cpp: In function ‘SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsNMixNNGP.cpp:1289:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1289 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:335:10: note: ‘sigmaSqPSamples_r’ was declared here
335 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1290:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: ‘alphaStarSamples_r’ was declared here
336 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1293:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1293 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:344:10: note: ‘sigmaSqMuSamples_r’ was declared here
344 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: ‘betaStarSamples_r’ was declared here
345 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1398:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1398 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:352:10: note: ‘kappaSamples_r’ was declared here
352 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1394:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1394 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:237:12: note: ‘tmp_0’ was declared here
237 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
spAbundGaussianNNGP.cpp: In function ‘SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spAbundGaussianNNGP.cpp:662:52: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
662 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:229:10: note: ‘yRepSamples_r’ was declared here
229 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:663:60: warning: ‘yRepZeroSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: ‘yRepZeroSamples_r’ was declared here
230 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:50: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: ‘muSamples_r’ was declared here
231 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:666:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
666 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: ‘likeSamples_r’ was declared here
232 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:670:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
670 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:247:10: note: ‘sigmaSqMuSamples_r’ was declared here
247 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:672:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
672 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: ‘betaStarSamples_r’ was declared here
248 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundNNGP.cpp -o spAbundNNGP.o
spAbundNNGP.cpp: In function ‘SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spAbundNNGP.cpp:759:55: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:222:10: note: ‘yRepSamples_r’ was declared here
222 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:758:53: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
758 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: ‘muSamples_r’ was declared here
223 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:761:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
761 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: ‘likeSamples_r’ was declared here
224 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:860:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
860 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:236:10: note: ‘kappaSamples_r’ was declared here
236 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:770:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:242:10: note: ‘sigmaSqMuSamples_r’ was declared here
242 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:772:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
772 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: ‘betaStarSamples_r’ was declared here
243 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundNNGPPredict.cpp -o spAbundNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spDSNNGP.cpp -o spDSNNGP.o
spDSNNGP.cpp: In function ‘SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spDSNNGP.cpp:1234:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1234 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:260:10: note: ‘kappaSamples_r’ was declared here
260 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1127:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1127 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:272:10: note: ‘sigmaSqPSamples_r’ was declared here
272 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1129:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1129 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: ‘alphaStarSamples_r’ was declared here
273 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1121:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1121 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:281:10: note: ‘sigmaSqMuSamples_r’ was declared here
281 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1123:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1123 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: ‘betaStarSamples_r’ was declared here
282 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1230:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1230 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:304:12: note: ‘tmp_0’ was declared here
304 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGP.cpp -o spNMixNNGP.o
spNMixNNGP.cpp: In function ‘SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spNMixNNGP.cpp:1075:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1075 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:258:10: note: ‘kappaSamples_r’ was declared here
258 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:975:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
975 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:270:10: note: ‘sigmaSqPSamples_r’ was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:977:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
977 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: ‘alphaStarSamples_r’ was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:969:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
969 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:279:10: note: ‘sigmaSqMuSamples_r’ was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:971:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
971 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: ‘betaStarSamples_r’ was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1071:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1071 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:291:12: note: ‘tmp_0’ was declared here
291 | double tmp_0, tmp_02;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGP.cpp -o svcAbundNNGP.o
svcAbundNNGP.cpp: In function ‘SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svcAbundNNGP.cpp:713:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
713 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:243:10: note: ‘sigmaSqMuSamples_r’ was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:715:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
715 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:244:10: note: ‘betaStarSamples_r’ was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:582:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized]
582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundNNGP.cpp:330:12: note: ‘logDet’ was declared here
330 | double logDet;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
svcMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svcMsAbundGaussianNNGP.cpp:1030:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1030 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:320:10: note: ‘sigmaSqMuSamples_r’ was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1031:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: ‘betaStarSamples_r’ was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c waicAbund.cpp -o waicAbund.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spAbundNNGPPredict.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp29JcZe/R.INSTALL3a0643406b8ddf/spAbundance/src'
make[1]: Entering directory '/tmp/Rtmp29JcZe/R.INSTALL3a0643406b8ddf/spAbundance/src'
make[1]: Leaving directory '/tmp/Rtmp29JcZe/R.INSTALL3a0643406b8ddf/spAbundance/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spAbundance/00new/spAbundance/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spAbundance’
finding HTML links ... done
DS html
NMix html
abund html
bbsData.rda html
bbsPredData.rda html
dataNMixSim.rda html
fitted.DS html
fitted.NMix html
fitted.abund html
fitted.lfMsAbund html
fitted.lfMsDS html
fitted.lfMsNMix html
fitted.msAbund html
fitted.msDS html
fitted.msNMix html
fitted.sfMsAbund html
fitted.sfMsDS html
fitted.sfMsNMix html
fitted.spAbund html
fitted.spDS html
fitted.spNMix html
fitted.svcAbund html
fitted.svcMsAbund html
hbefCount2015.rda html
lfMsAbund html
lfMsDS html
lfMsNMix html
msAbund html
msDS html
msNMix html
neonDWP.rda html
neonPredData.rda html
ppcAbund html
predict.DS html
predict.NMix html
predict.abund html
predict.lfMsAbund html
predict.lfMsDS html
predict.lfMsNMix html
predict.msAbund html
predict.msDS html
predict.msNMix html
predict.sfMsAbund html
predict.sfMsDS html
predict.sfMsNMix html
predict.spAbund html
predict.spDS html
predict.spNMix html
predict.svcAbund html
predict.svcMsAbund html
sfMsAbund html
sfMsDS html
sfMsNMix html
simAbund html
simDS html
simMsAbund html
simMsDS html
simMsNMix html
simNMix html
spAbund html
spDS html
spNMix html
summary.DS html
summary.NMix html
summary.abund html
summary.lfMsAbund html
summary.lfMsDS html
summary.lfMsNMix html
summary.msAbund html
summary.msDS html
summary.msNMix html
summary.sfMsAbund html
summary.sfMsDS html
summary.sfMsNMix html
summary.spAbund html
summary.spDS html
summary.spNMix html
summary.svcAbund html
summary.svcMsAbund html
svcAbund html
svcMsAbund html
waicAbund html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘spAbundance’ as ‘spAbundance_0.1.3_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (spAbundance)