* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘snplinkage’ ...
** this is package ‘snplinkage’ version ‘1.2.0’
** package ‘snplinkage’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘snplinkage’
finding HTML links ... done
chisq_pvalues html
chisq_pvalues_gdata html
compound html
crohn html
diamond_annots html
exposition html
fetch_allele1.GdsGenotypeReader html
fetch_allele1.GenotypeData html
fetch_allele1.GenotypeDataSubset html
fetch_allele1.default html
fetch_allele2.GdsGenotypeReader html
fetch_allele2.GenotypeData html
fetch_allele2.GenotypeDataSubset html
fetch_allele2.default html
fetch_gds.GdsGenotypeReader html
fetch_gds.GenotypeData html
fetch_gds.GenotypeDataSubset html
fetch_gds.default html
gdata_add_gene_annots html
gdata_add_gene_annots_aim_example html
gdata_add_gene_annots_hladr_example html
gdata_scans_annots html
gdata_snps_annots html
get_biomart_metadb html
get_scan_annot.GenotypeData html
get_scan_annot.GenotypeDataSubset html
get_snp_annot.GenotypeData html
get_snp_annot.GenotypeDataSubset html
ggplot_associations html
ggplot_ld html
ggplot_snp_pos html
gtable_ld html
gtable_ld_associations html
gtable_ld_associations_combine html
gtable_ld_associations_gdata html
gtable_ld_gdata html
gtable_ld_grobs html
is_snp_first_dim.GdsGenotypeReader html
is_snp_first_dim.GenotypeData html
is_snp_first_dim.MatrixGenotypeReader html
is_snp_first_dim.NcdfGenotypeReader html
is_snp_first_dim.default html
is_snp_first_dim.gds.class html
load_gds_as_genotype_data html
parallel_apply html
pipe html
print_qc_as_tex_table html
save_hgdp_as_gds html
select_region_idxs html
snplinkage-package html
snprelate_allele_frequencies html
snprelate_ld html
snprelate_ld_select html
snprelate_qc html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (snplinkage)