* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘snplinkage’ ... ** package ‘snplinkage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘snplinkage’ finding HTML links ... done chisq_pvalues html chisq_pvalues_gdata html compound html diamond_annots html exposition html gdata_add_gene_annots html gdata_add_gene_annots_aim_example html gdata_add_gene_annots_hladr_example html gdata_scans_annots html gdata_snps_annots html get_biomart_metadb html ggplot_associations html ggplot_ld html ggplot_snp_pos html gtable_ld html gtable_ld_associations html gtable_ld_associations_gdata html gtable_ld_gdata html load_gds_as_genotype_data html parallel_apply html pipe html print_qc_as_tex_table html save_hgdp_as_gds html select_region_idxs html snplinkage-package html snprelate_allele_frequencies html snprelate_ld html snprelate_ld_select html snprelate_qc html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (snplinkage)