* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘smfishHmrf’ ...
** this is package ‘smfishHmrf’ version ‘0.1’
** package ‘smfishHmrf’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPXwTpu/R.INSTALL7812b3225ff2b/smfishHmrf/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c registerDyanmicSymbol.c -o registerDyanmicSymbol.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c updateIndicesHMRFEM.c -o updateIndicesHMRFEM.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o smfishHmrf.so registerDyanmicSymbol.o updateIndicesHMRFEM.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPXwTpu/R.INSTALL7812b3225ff2b/smfishHmrf/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPXwTpu/R.INSTALL7812b3225ff2b/smfishHmrf/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPXwTpu/R.INSTALL7812b3225ff2b/smfishHmrf/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-smfishHmrf/00new/smfishHmrf/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘smfishHmrf’
    finding HTML links ... done
    checkErrors                             html  
    checkErrorsMulti                        html  
    checkStopVerbose                        html  
    checkStopVerboseMulti                   html  
    findDampFactor                          html  
    getDen                                  html  
    initialIndices                          html  
    initialIndicesMulti                     html  
    relerr                                  html  
    relerr.multi                            html  
    seqfishplus                             html  
    smfishHmrf                              html  
    smfishHmrf.generate.centroid            html  
    smfishHmrf.generate.centroid.it         html  
    smfishHmrf.generate.centroid.save       html  
    smfishHmrf.generate.centroid.use.exist
                                            html  
    smfishHmrf.hmrfem                       html  
    smfishHmrf.hmrfem.multi                 html  
    smfishHmrf.hmrfem.multi.it              html  
    smfishHmrf.hmrfem.multi.it.min          html  
    smfishHmrf.hmrfem.multi.save            html  
    smfishHmrf.read.expression              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (smfishHmrf)