* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘smerc’ ...
** package ‘smerc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpbtftdY/R.INSTALL3d663a5c110e2c/smerc/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_functions.cpp -o distance_functions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c noc_cpp.cpp -o noc_cpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optimized_statistics.cpp -o optimized_statistics.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scsg2_cpp.cpp -o scsg2_cpp.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o smerc.so RcppExports.o distance_functions.o noc_cpp.o optimized_statistics.o scsg2_cpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpbtftdY/R.INSTALL3d663a5c110e2c/smerc/src'
make[1]: Entering directory '/tmp/RtmpbtftdY/R.INSTALL3d663a5c110e2c/smerc/src'
make[1]: Leaving directory '/tmp/RtmpbtftdY/R.INSTALL3d663a5c110e2c/smerc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-smerc/00new/smerc/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘smerc’
finding HTML links ... done
all_shape_dists html
arg_check_dist_ellipse html
bn.test html
bn.zones html
cepp.sim html
cepp.test html
cepp.weights html
clusters html
color.clusters html
combine.zones html
csg html
dc.sim html
dc.test html
dc.zones html
dist.ellipse html
distinct html
dmst.sim html
dmst.test html
dmst.zones html
edmst.sim html
edmst.test html
edmst.zones html
elbow_point html
elliptic.nn html
elliptic.penalty html
elliptic.sim html
elliptic.sim.adj html
elliptic.test html
elliptic.zones html
fast.sim html
fast.test html
fast.zones html
flex.sim html
flex.test html
flex.zones html
flex_test html
flex_zones html
gedist html
knn html
lget html
logical2zones html
mc.pvalue html
mlf.test html
mlf.zones html
mlink.sim html
mlink.test html
mlink.zones html
morancr.sim html
morancr.stat html
morancr.test html
mst.all html
mst.seq html
nclusters html
neast html
neastw html
nn.cumsum html
nn2zones html
nndist html
nndup html
noc_enn html
noc_nn html
noz html
nydf html
nypoly html
nysf html
nysp html
nyw html
optimal_ubpop html
plot.smerc_cluster html
plot.smerc_optimal_ubpop html
plot.tango html
precog.sim html
precog.test html
prep.mst html
print.smerc_cluster html
print.smerc_optimal_ubpop html
print.smerc_similarity_test html
print.tango html
rflex.midp html
rflex.sim html
rflex.test html
rflex.zones html
rflex_zones html
scan.nn html
scan.sim html
scan.sim.adj html
scan.stat html
scan.test html
scan.zones html
scan_stat html
seq_scan_sim html
seq_scan_test html
sig_noc html
sig_prune html
smerc html
smerc_cluster html
stat.poisson.adj html
summary.smerc_cluster html
tango.stat html
tango.test html
tango.weights html
uls.sim html
uls.test html
uls.zones html
w2segments html
zones.sum html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (smerc)