* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘sits’ ...
** package ‘sits’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp4ZFVck/R.INSTALL2089db14c73c1e/sits/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c combine_data.cpp -o combine_data.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kernel.cpp -o kernel.o
kernel.cpp: In function ‘double _modal(const Rcpp::NumericVector&)’:
kernel.cpp:47:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
47 | for(size_t i=0; i<neigh.size(); i++) {
| ~^~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kohonen_distances.cpp -o kohonen_distances.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kohonen_som.cpp -o kohonen_som.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c label_class.cpp -o label_class.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c linear_interp.cpp -o linear_interp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nnls_solver.cpp -o nnls_solver.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c normalize_data.cpp -o normalize_data.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c normalize_data_0.cpp -o normalize_data_0.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reduce_fns.cpp -o reduce_fns.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sampling_window.cpp -o sampling_window.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth.cpp -o smooth.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth_bayes.cpp -o smooth_bayes.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth_sgp.cpp -o smooth_sgp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth_whit.cpp -o smooth_whit.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c uncertainty.cpp -o uncertainty.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o sits.so RcppExports.o combine_data.o kernel.o kohonen_distances.o kohonen_som.o label_class.o linear_interp.o nnls_solver.o normalize_data.o normalize_data_0.o reduce_fns.o sampling_window.o smooth.o smooth_bayes.o smooth_sgp.o smooth_whit.o uncertainty.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp4ZFVck/R.INSTALL2089db14c73c1e/sits/src'
make[1]: Entering directory '/tmp/Rtmp4ZFVck/R.INSTALL2089db14c73c1e/sits/src'
make[1]: Leaving directory '/tmp/Rtmp4ZFVck/R.INSTALL2089db14c73c1e/sits/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-sits/00new/sits/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘sits’
finding HTML links ... done
cerrado_2classes html
dot-check_date_parameter html
impute_linear html
plot html
plot.class_cube html
plot.class_vector_cube html
plot.geo_distances html
plot.patterns html
plot.predicted html
plot.probs_cube html
plot.probs_vector_cube html
plot.raster_cube html
plot.rfor_model html
plot.sits_accuracy html
plot.sits_cluster html
plot.som_evaluate_cluster html
plot.som_map html
plot.torch_model html
plot.uncertainty_cube html
plot.uncertainty_vector_cube html
plot.variance_cube html
plot.vector_cube html
plot.xgb_model html
point_mt_6bands html
print.sits_accuracy html
print.sits_area_accuracy html
samples_l8_rondonia_2bands html
samples_modis_ndvi html
sits-package html
sits_accuracy html
sits_accuracy_summary html
sits_apply html
sits_as_sf html
sits_bands html
sits_bbox html
sits_classify html
sits_clean html
sits_cluster_clean html
sits_cluster_dendro html
sits_cluster_frequency html
sits_colors html
sits_colors_qgis html
sits_colors_reset html
sits_colors_set html
sits_colors_show html
sits_combine_predictions html
sits_confidence_sampling html
sits_config html
sits_config_show html
sits_cube html
sits_cube_copy html
sits_factory_function html
sits_filter html
sits_formula_linear html
sits_formula_logref html
sits_geo_dist html
sits_get_data html
sits_impute html
sits_kfold_validate html
sits_label_classification html
sits_labels html
sits_labels_summary html
sits_lighttae html
sits_list_collections html
sits_merge html
sits_mgrs_to_roi html
sits_mixture_model html
sits_mlp html
sits_model_export html
sits_mosaic html
sits_patterns html
sits_pred_features html
sits_pred_normalize html
sits_pred_reference html
sits_pred_sample html
sits_predictors html
sits_reclassify html
sits_reduce html
sits_reduce_imbalance html
sits_regularize html
sits_resnet html
sits_rfor html
sits_run_examples html
sits_run_tests html
sits_sample html
sits_sampling_design html
sits_segment html
sits_select html
sits_sgolay html
sits_show_prediction html
sits_slic html
sits_smooth html
sits_som html
sits_som_clean_samples html
sits_som_evaluate_cluster html
sits_stats html
sits_stratified_sampling html
sits_svm html
sits_tae html
sits_tempcnn html
sits_timeline html
sits_to_csv html
sits_to_xlsx html
sits_train html
sits_tuning html
sits_tuning_hparams html
sits_uncertainty html
sits_uncertainty_sampling html
sits_validate html
sits_variance html
sits_view html
sits_whittaker html
sits_xgboost html
summary.class_cube html
summary.raster_cube html
summary.sits html
summary.sits_accuracy html
summary.sits_area_accuracy html
tick-sits_labels-set-tick html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘sits’ as ‘sits_1.5.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (sits)