* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘simplextree’ ...
** package ‘simplextree’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmppiMsIF/R.INSTALL22c62b7077bed1/simplextree/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic]
168 | };
| ^
| -
In file included from ../inst/include/simplextree.h:252:
../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic]
159 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic]
296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic]
393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic]
443 | update_simplex(){ return; };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic]
475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic]
560 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic]
647 | update_simplex(){ return; };
| ^
| -
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c UnionFind.cpp -o UnionFind.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c discreteR.cpp -o discreteR.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nerve.cpp -o nerve.o
In file included from nerve.cpp:5:
../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic]
168 | };
| ^
| -
In file included from ../inst/include/simplextree.h:252:
../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic]
159 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic]
296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic]
393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic]
443 | update_simplex(){ return; };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic]
475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic]
560 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic]
647 | update_simplex(){ return; };
| ^
| -
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplextree_module.cpp -o simplextree_module.o
In file included from simplextree_module.cpp:5:
../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic]
168 | };
| ^
| -
In file included from ../inst/include/simplextree.h:252:
../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic]
159 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic]
296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic]
393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic]
443 | update_simplex(){ return; };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic]
475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){};
| ^
| -
../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic]
560 | };
| ^
| -
../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic]
647 | update_simplex(){ return; };
| ^
| -
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o simplextree.so RcppExports.o UnionFind.o discreteR.o nerve.o simplextree_module.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppiMsIF/R.INSTALL22c62b7077bed1/simplextree/src'
make[1]: Entering directory '/tmp/RtmppiMsIF/R.INSTALL22c62b7077bed1/simplextree/src'
make[1]: Leaving directory '/tmp/RtmppiMsIF/R.INSTALL22c62b7077bed1/simplextree/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-simplextree/00new/simplextree/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘simplextree’
finding HTML links ... done
adjacent html
as.list.st_traversal html
clear html
clone html
coface_roots html
cofaces html
collapse html
contract html
degree html
deserialize html
empty_face html
enclosing_radius html
expand html
faces html
find html
flag html
generate_ids html
insert html
inverse.choose html
is_face html
is_tree html
k_simplices html
k_skeleton html
level_order html
link html
maximal html
nat_to_sub html
nerve html
pipe html
plot.simplextree html
plot_simplextree html
preorder html
print.st_traversal html
print_simplices html
reindex html
remove html
rips html
serialize html
simplex_tree html
simplextree-package html
sub_to_nat html
threshold html
traverse html
union_find html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (simplextree)