* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘simcross’ ...
** this is package ‘simcross’ version ‘0.6’
** package ‘simcross’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcpF47/R.INSTALL2f8314714943b7/simcross/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c convert2geno.cpp -o convert2geno.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c debug_util.cpp -o debug_util.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c get_geno.cpp -o get_geno.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c random.cpp -o random.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sim_meiosis.cpp -o sim_meiosis.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o simcross.so RcppExports.o convert2geno.o debug_util.o get_geno.o random.o sim_meiosis.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcpF47/R.INSTALL2f8314714943b7/simcross/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphcpF47/R.INSTALL2f8314714943b7/simcross/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphcpF47/R.INSTALL2f8314714943b7/simcross/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-simcross/00new/simcross/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘simcross’
    finding HTML links ... done
    AILped                                  html  
    CCcolors                                html  
    calc_Lstar                              html  
    check_pedigree                          html  
    collapse_do_alleles                     html  
    convert2geno                            html  
    convert2geno_allchr                     html  
    create_parent                           html  
    cross                                   html  
    get_geno                                html  
    mouseL_cox                              html  
    mouseL_mgi                              html  
    plot_crosslines                         html  
    plot_ind                                html  
    sim_4way_pedigree                       html  
    sim_ail_pedigree                        html  
    sim_ail_pedigree_fix_n                  html  
    sim_crossovers                          html  
    sim_do_pedigree                         html  
    sim_do_pedigree_fix_n                   html  
    sim_dof1_pedigree                       html  
    sim_from_pedigree                       html  
    sim_from_pedigree_allchr                html  
    sim_meiosis                             html  
    sim_ril_pedigree                        html  
    where_het                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (simcross)