* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shrinkDSM’ ...
** package ‘shrinkDSM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpLpHwlY/R.INSTALL9a5273740dde3/shrinkDSM/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stochvol/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stochvol/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c do_shrinkDSM.cpp -o do_shrinkDSM.o
In file included from do_shrinkDSM.cpp:9:
In function ‘double shrinkTVP::TG_MH_step(double, double, double, const arma::vec&, const arma::vec&, double, double, bool, double, double, bool, bool, arma::vec&, double&, double, double, int&, int, int&)’,
inlined from ‘Rcpp::List do_shrinkDSM(arma::vec, arma::mat, std::string, arma::vec, arma::vec, arma::vec, int, int, int, double, double, double, double, arma::vec, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, bool, arma::vec, arma::vec, arma::vec, arma::ivec, bool, Rcpp::List)’ at do_shrinkDSM.cpp:744:45:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include/shrinkTVP.h:238:16: warning: ‘e2_phi_samp’ may be used uninitialized [-Wmaybe-uninitialized]
238 | return func(current_val,
| ~~~~^~~~~~~~~~~~~
239 | c_tuning_par,
| ~~~~~~~~~~~~~
240 | scale_par,
| ~~~~~~~~~~
241 | scale_vec,
| ~~~~~~~~~~
242 | param_vec,
| ~~~~~~~~~~
243 | b,
| ~~
244 | nu,
| ~~~
245 | is_c,
| ~~~~~
246 | scale_scale,
| ~~~~~~~~~~~~
247 | other_hyp,
| ~~~~~~~~~~
248 | common_shrink_par,
| ~~~~~~~~~~~~~~~~~~
249 | adaptive,
| ~~~~~~~~~
250 | batch,
| ~~~~~~
251 | curr_sd,
| ~~~~~~~~
252 | target_rate,
| ~~~~~~~~~~~~
253 | max_adapt,
| ~~~~~~~~~~
254 | batch_nr,
| ~~~~~~~~~
255 | batch_size,
| ~~~~~~~~~~~
256 | batch_pos);
| ~~~~~~~~~~
do_shrinkDSM.cpp: In function ‘Rcpp::List do_shrinkDSM(arma::vec, arma::mat, std::string, arma::vec, arma::vec, arma::vec, int, int, int, double, double, double, double, arma::vec, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, bool, bool, double, double, double, double, double, double, double, double, double, double, double, double, double, double, double, bool, arma::vec, arma::vec, arma::vec, arma::ivec, bool, Rcpp::List)’:
do_shrinkDSM.cpp:418:10: note: ‘e2_phi_samp’ was declared here
418 | double e2_phi_samp;
| ^~~~~~~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stochvol/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stochvol/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_beta_McCausland.cpp -o sample_beta_McCausland.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DARMA_WARN_LEVEL=0 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/stochvol/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/shrinkTVP/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sample_parameters.cpp -o sample_parameters.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o shrinkDSM.so RcppExports.o do_shrinkDSM.o init.o sample_beta_McCausland.o sample_parameters.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpLpHwlY/R.INSTALL9a5273740dde3/shrinkDSM/src'
make[1]: Entering directory '/tmp/RtmpLpHwlY/R.INSTALL9a5273740dde3/shrinkDSM/src'
make[1]: Leaving directory '/tmp/RtmpLpHwlY/R.INSTALL9a5273740dde3/shrinkDSM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-shrinkDSM/00new/shrinkDSM/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘shrinkDSM’
finding HTML links ... done
divisionpoints html
gastric html
plot.mcmc.dsm.tvp html
plot.shrinkDSM html
plot.shrinkDSM_pred html
predict.shrinkDSM html
prep_tvinput html
print.shrinkDSM html
shrinkDSM html
finding level-2 HTML links ... done
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shrinkDSM)